Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30285
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30810.1 68415.m03757 gibberellin-regulated family protein si...    32   0.26 
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    28   3.2  
At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein c...    27   7.5  
At3g22710.1 68416.m02865 F-box family protein contains F-box dom...    27   7.5  
At5g40540.1 68418.m04920 protein kinase, putative similar to pro...    27   9.9  
At3g23560.1 68416.m02964 MATE efflux family protein similar to r...    27   9.9  

>At2g30810.1 68415.m03757 gibberellin-regulated family protein
           similar to GASA5 [Arabidopsis thaliana] GI:1289320;
           contains Pfam profile PF02704: Gibberellin regulated
           protein
          Length = 106

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 513 LRSRQKAESCDRKWGAGNRWPSRKPSSGEANQTTVCHRKRCCFYC 379
           L S+ +A +  +  G G+  P   P + E   +   HRK C F+C
Sbjct: 25  LESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATSHRKPCLFFC 69


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 218 GELFDELKTFLEEKAEDIQSI 156
           G  FD +KTFL+E  E+I+ I
Sbjct: 778 GRFFDSMKTFLKEAEEEIRKI 798


>At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 125

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 387 FYCR*RHLYYICERYK*EN*FQTGRKTNSLSRRSHSNPILR 265
           F+CR  HL++   RY  E+   +  K+ ++   +  NP+++
Sbjct: 78  FHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVK 118


>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 326

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 40  IFNFIPLLIRIVNLHILY 93
           IFN++P L++I N H+L+
Sbjct: 307 IFNYVPRLVQIYNGHLLF 324


>At5g40540.1 68418.m04920 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 353

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 116 EVFRL*IRCVIWSRSTVYLQPSLPKMFSVHQIALPV**SGCC 241
           E+ ++ +RC+    ST  + P++ ++FS     LP    G C
Sbjct: 281 EIIQMLLRCLSTISSTELVPPAIKRVFSSENTVLPPESPGTC 322


>At3g23560.1 68416.m02964 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 477

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 40  IFNFIPLLIRIVNLHILYSICGI 108
           IF+F+PL+I I   ++L  + G+
Sbjct: 194 IFSFVPLVINIATAYVLVYVAGL 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,455,139
Number of Sequences: 28952
Number of extensions: 203065
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)