Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30281
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 340 7e-95
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 190 1e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 187 1e-48
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 146 1e-36
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 91 7e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 86 3e-18
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 1e-15
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 64 9e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 47 1e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 8.9
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 8.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 340 bits (836), Expect = 7e-95
Identities = 156/170 (91%), Positives = 165/170 (97%)
Frame = +3
Query: 6 GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHSIITNWDDMEKIWHHTFYNELRVAPEEH 185
G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEH I+ NWDDMEKIWHHTFYNELRVAPEEH
Sbjct: 42 GIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEH 101
Query: 186 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 365
P LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+H
Sbjct: 102 PCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTH 161
Query: 366 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 515
TVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct: 162 TVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 190 bits (463), Expect = 1e-49
Identities = 84/162 (51%), Positives = 120/162 (74%)
Frame = +3
Query: 30 KDSYVGDEAQSKRGILTLKYPIEHSIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 209
KD VGDEA++ R +L +KYP+E+ II ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 210 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 389
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 390 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 515
L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR+
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVRE 211
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 187 bits (455), Expect = 1e-48
Identities = 86/170 (50%), Positives = 123/170 (72%), Gaps = 1/170 (0%)
Frame = +3
Query: 9 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHSIITNWDDMEKIWHHTFYNE-LRVAPEEH 185
VM QKD +VG EAQ+ RG+L ++ PIE II NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 186 PVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 365
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 366 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 515
+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+
Sbjct: 167 SVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVRE 216
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 146 bits (355), Expect = 1e-36
Identities = 75/167 (44%), Positives = 103/167 (61%), Gaps = 11/167 (6%)
Frame = +3
Query: 33 DSYVGDEAQSKRGI-LTLKYPIEHSIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 209
D ++G++A K +L YPI H I NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 210 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 365
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 366 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 500
+P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 91.5 bits (217), Expect = 7e-20
Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Frame = +3
Query: 21 MGQKDSYVGDEAQSKRGILTL-KYPIEHSIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 197
+ + + VG++ + G ++ + P E ++I+NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 198 TEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 371
TE NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 372 PIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 482
P+ G + R+ G + YL+K+ + SF
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 86.2 bits (204), Expect = 3e-18
Identities = 42/134 (31%), Positives = 68/134 (50%)
Frame = +3
Query: 75 LTLKYPIEHSIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 254
+ +K I + + NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 255 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 434
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 435 LTDYLMKILTERGY 476
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.4 bits (182), Expect = 1e-15
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +3
Query: 6 GVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHSIITNWDDMEKIWHHTFYNELRVAPE 179
GV + ++ YV DE Q I + +K + II +W+ W +L+V P
Sbjct: 41 GVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPT 100
Query: 180 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 359
E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDN 160
Query: 360 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 482
+ P+ +G + I + LAG L + ++ F
Sbjct: 161 ASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 64.5 bits (150), Expect = 9e-12
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Frame = +3
Query: 90 PIEHSIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 257
PI+ + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 258 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 437
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 438 TDYLMKILTE 467
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.2 bits (107), Expect = 1e-06
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Frame = +3
Query: 39 YVGDEAQSKRGILTLKYPIEHS--IITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 206
++G+E + TL++ H + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 207 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 344
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 345 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 479
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/101 (18%), Positives = 48/101 (47%)
Frame = +3
Query: 180 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 359
++ V+ L + EK+ I+F + + +++ + + +G + V+D G
Sbjct: 243 QYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQK 302
Query: 360 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 482
+ + EG +P++ ++++ G D+T MK+L + +
Sbjct: 303 TSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 150 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 293
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 376 STKVTLCPTPSSVWTW 423
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 192 LLTEAPLNPKANREKMTQIMFETFN 266
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 377 LRRLRSAPRHPPSGLGWSRLDRLPHED 457
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 9 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 95
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 113 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 9
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 90 PIEHSIITNWDDME-KIWH--HTFYNELRVAPEEHPVLLTEAPLNP 218
P + +I + DD +W+ HTF+++ + P EH + ++++ +NP
Sbjct: 266 PQGNFVIGSADDRTLNVWNLRHTFHHKGKTRPPEHRI-VSQSIINP 310
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +1
Query: 361 PTPYPSTKVTLC-PTP 405
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 345 SGDGVSHTVPIYEGYALP 398
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,413
Number of Sequences: 5004
Number of extensions: 36996
Number of successful extensions: 144
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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