Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30280
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   2.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   2.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   2.9  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   2.9  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   5.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.7  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -2

Query: 218 LNPITPQFTPRHFGHE-----FTHRDPQASPHNHSRSNSIEMS*IKTIESS*YFDVMICS 54
           +N ITP F P + G E     ++H +P +  + H + + +    I T E +        S
Sbjct: 292 INQITPPFLPDNLGQENRGELYSHDNPTSMVYEHPKFDELPNGFIDTHELNILSRSFTAS 351

Query: 53  LIKYLRSGNV 24
             + LR  N+
Sbjct: 352 PNQILRESNM 361


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 201 RSDRIEYPAPPPSKCAKFLYYTWKLCSVVFSHFVMIS 311
           RS+ I++P PP + C K   +   + +  ++ F ++S
Sbjct: 443 RSNSIDFPTPPKALCPKLFCFRDDIVADDYTKFSLLS 479


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 273  LCSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDHFEQVKMNISQ 413
            L S VF H  ++SL        A +   L+ EH+ D F  + +   +
Sbjct: 1512 LLSEVFDHCRIVSLYTVSASQDAELLRWLQEEHDMDFFAIIPLQFKE 1558


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 210 RIEYPAPPPSKCAKFLYYTWKLCSVVFSHFVMISLVVAYCILGAVIFE 353
           R+++P  P + C KFL    ++CS+   H+      +A  + G  +F+
Sbjct: 522 RLDFPERPGALC-KFLRSIKEVCSISLFHYRNCGGDIASVLAGLRVFD 568


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 303 MISLVVAYCILGAVIFEKLEAEHEK--DHFEQVKMNISQIRKNTTQSIWTMTKSVPLFNH 476
           +I LV+ +  L     +K  AE ++    FE+ K  ++ +RKNT Q          + + 
Sbjct: 109 LIVLVIIFYCLRHFKRKKFLAEQQEFERQFEEEKSRLAAVRKNTEQEKMGYRGGYQM-HS 167

Query: 477 TNWTSS 494
           T W SS
Sbjct: 168 TPWASS 173


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 MNISQIRKNTTQSIWTMTKSVPLFNHTNWTSST 497
           +N + +  NTT   W  T S+     TN TSS+
Sbjct: 342 INSASMSSNTTYFYWNSTSSLSSSVFTNTTSSS 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,010
Number of Sequences: 5004
Number of extensions: 36767
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)