Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30280
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 28 4.0
SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07) 28 4.0
SB_57086| Best HMM Match : PT (HMM E-Value=2.4) 28 4.0
SB_40307| Best HMM Match : YscO (HMM E-Value=5.4) 28 4.0
SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 28 5.3
SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
>SB_46447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 312 LVVAYCILGAVIFEKLEAEHEKDHFEQVKMNISQIRKNTTQ 434
L + Y +G V F +E H+K + K N ++R NTT+
Sbjct: 12 LFIVYLSIGMVSFMAIEGPHQKVEAAKSKENQEELRLNTTR 52
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 255 LYYTWKLCSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDHFEQVKMNISQIRKNTTQ 434
LYY + C FS++++I +L L A +K +FE+ K N++++
Sbjct: 596 LYYYCRCCCYNFSYYLIILTQADAFLLAIAGGPDLLARIQKRYFEKSKSNVARLMSVVVN 655
Query: 435 SIW 443
W
Sbjct: 656 RDW 658
>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 261 YTWKLCSVVFSHFVMISLVVAYCILGAVIFEKLEAEHE 374
Y W CS+V I L+V Y + V ++++ A HE
Sbjct: 190 YMWLGCSIVTIAIPFIVLIVCYANIAKVTWKQVRAIHE 227
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -1
Query: 288 KPPNIASTCSIGISHIC*AEAPGTQSYHSSVHAETFRTRVYTPRPSSVSPQSL 130
+P N A TCS I QSYHS+ H T R PR +P+S+
Sbjct: 478 QPDNTAGTCSCP-QRIAAPPPHALQSYHSNAHQRTTR----DPRGPYRNPESM 525
>SB_38766| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
Length = 625
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/68 (19%), Positives = 28/68 (41%)
Frame = +3
Query: 276 CSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDHFEQVKMNISQIRKNTTQSIWTMTK 455
C V +V YC+ +VIF E H ++ +++++R + + + +
Sbjct: 50 CFHVIQELANAKVVHVYCVANSVIFSYEVVAEETKHALKLNAHLTKLRSSLQNDLLRLRE 109
Query: 456 SVPLFNHT 479
V F +
Sbjct: 110 RVAFFKES 117
>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
Length = 226
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 206 TPQFTPRHFGHEFTHRDPQASPHNH 132
T Q+T + H++TH+ P PH +
Sbjct: 87 THQYTHHQYTHQYTHQYPHQYPHQY 111
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 215 NPITPQFTPRHFGHEFTHRDPQASPHNH 132
+P T Q+T ++ H++TH+ PH +
Sbjct: 80 HPYTHQYTHQYTHHQYTHQYTHQYPHQY 107
>SB_40307| Best HMM Match : YscO (HMM E-Value=5.4)
Length = 172
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/68 (19%), Positives = 28/68 (41%)
Frame = +3
Query: 276 CSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDHFEQVKMNISQIRKNTTQSIWTMTK 455
C V +V YC+ +VIF E H ++ +++++R + + + +
Sbjct: 34 CFHVIQELANAKVVHVYCVANSVIFSYEVVAEETKHALKLNAHLTKLRSSLQNDLLRLRE 93
Query: 456 SVPLFNHT 479
V F +
Sbjct: 94 RVAFFKES 101
>SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 179 GHEFTHRDPQASPHNHSRSN 120
GH ++H P ASPH + N
Sbjct: 184 GHHYSHASPMASPHRDNDKN 203
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 138 VGRRLRVAVCKLVSEMSRRELRSDRIEYPAPPPSKCAKFLYYTWKLCSV 284
VGRRLR VC + + ++ S P CA + TW CSV
Sbjct: 121 VGRRLRSVVCSIHGKCDKQRQPSSSTLCNMGP---CATWQTGTWSQCSV 166
>SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 257
Score = 27.9 bits (59), Expect = 5.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 179 GHEFTHRDPQASPHNHSRSN 120
GH ++H P ASPH + N
Sbjct: 209 GHHYSHASPMASPHRDNDKN 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,892
Number of Sequences: 59808
Number of extensions: 293820
Number of successful extensions: 893
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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