Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30279
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    33   0.12 
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    33   0.12 
AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine re...    29   1.5  

>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 467 IGRIGYRAPPRVFFFFFYLNVC 402
           IG  G+ APP VF FFF+L  C
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYC 369


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 467 IGRIGYRAPPRVFFFFFYLNVC 402
           IG  G+ APP VF FFF+L  C
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYC 367


>AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 29 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/30 (36%), Positives = 22/30 (73%)
 Frame = -2

Query: 437 RVFFFFFYLNVCIIIRIVSQIAWILITNEN 348
           R+F++ F L+VC  + ++S I+++L  +EN
Sbjct: 42  RLFYYRFVLDVCFGLSLLSYISFLLFYSEN 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,556,313
Number of Sequences: 27780
Number of extensions: 163083
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)