Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30279
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    29   1.4  
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    29   1.4  
At3g05660.1 68416.m00630 disease resistance family protein conta...    27   5.7  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   9.9  
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar...    27   9.9  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   9.9  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 294 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 184
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 170


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 294 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKFSAN 184
           L  G   CRR +S  V+  GHSV+ T + +V  F  N
Sbjct: 34  LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYN 70


>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 485 IVIRLTIGRIGYRAPPRVFFFFFYLN 408
           IV+ LTIG I   + PR FF   Y+N
Sbjct: 837 IVLGLTIGHIVLSSKPRWFFKVLYIN 862


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 205 IGPDGVTYAVTYVANEGGFQPSAPHIPKA 291
           +G  G +   ++VA   GF+PS P  P A
Sbjct: 413 LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


>At3g52710.1 68416.m05807 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 289

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 293 KSTEQAPASSPKILIHLKSFRLLLESKRSVIR 388
           K    AP S+P    +  S R+ L+SK S+IR
Sbjct: 74  KGNSSAPISNPNTNPNSSSHRISLKSKASIIR 105


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 278  TFPRLKSTEQAPASSPKILIHLKS 349
            TFP+L+S+E A A  P ++  LKS
Sbjct: 1899 TFPKLRSSEAATACIPHLIGALKS 1922


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,018,515
Number of Sequences: 28952
Number of extensions: 152727
Number of successful extensions: 315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)