Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30278
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    28   4.3  
At4g24290.2 68417.m03488 expressed protein                             27   5.7  
At4g24290.1 68417.m03487 expressed protein                             27   5.7  
At3g44060.1 68416.m04720 F-box family protein contains F-box dom...    27   5.7  
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family...    27   5.7  
At1g18990.1 68414.m02362 expressed protein contains Pfam profile...    27   5.7  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    27   7.5  
At1g63700.1 68414.m07209 protein kinase, putative contains prote...    27   7.5  
At1g56350.1 68414.m06479 peptide chain release factor, putative ...    27   9.9  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 248  GSYSYTNTDGKPETITYFADETGYHAQGESIP 343
            GS++  N +G  E I +FA+E GY    +S+P
Sbjct: 1985 GSFTTFNKNGTAERI-FFAEEIGYELLKDSLP 2015


>At4g24290.2 68417.m03488 expressed protein
          Length = 606

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 148 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 65
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At4g24290.1 68417.m03487 expressed protein
          Length = 350

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 148 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 65
           V + SIG G +    DLR+  C+GGS D
Sbjct: 13  VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39


>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 123 PAPMELTTTISRLPTASCVAKL 188
           P  M+LT  + +LPTASC  K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424


>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1338

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 143  NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 295
            +++ +T NG      SET E+ + L D   KP      RG+Y    TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107


>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 524

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 167 GIVRSETGELKEALDDDNKP 226
           G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 327 RVNLFLRSPPPRAK-LLNSL 383
           RV L+L  PPPRA  LLNSL
Sbjct: 154 RVILYLEGPPPRADILLNSL 173


>At1g63700.1 68414.m07209 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069; similar to MEK kinase
           (MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
          Length = 883

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 325 SMVSSLVSEVRNGFRFAVSVRVTVASTHSNNN 230
           S++S L S+  NG R  V++     S HSN N
Sbjct: 157 SLLSPLASDCENGNRTPVNISSRDQSMHSNKN 188


>At1g56350.1 68414.m06479 peptide chain release factor, putative
           similar to SP|P28353 Peptide chain release factor 2
           (RF-2). {Salmonella typhi}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 482

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
 Frame = -3

Query: 343 RNRFTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLLQLTSFAT---- 176
           R +F++++V     E+  G + A    + V   ++    +  V V  L++++ F +    
Sbjct: 266 RRKFSVTVVDEAPGEIA-GIKRAT---IKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRR 321

Query: 175 HDAVGSLEIVVVSSIGAG-VEFRPNDLRVVLCRGGSDDGSH 56
           H +  ++ ++ +   G+  VE   +DLR+   R G   G H
Sbjct: 322 HTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQH 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,390,747
Number of Sequences: 28952
Number of extensions: 202719
Number of successful extensions: 684
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)