Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30276
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 1.2
07_03_1086 + 23858419-23859423,23859527-23859610 29 2.1
01_01_0780 - 6036454-6037992 29 2.1
09_01_0140 + 2083885-2083969,2084178-2084653 28 2.7
07_03_0626 + 20060013-20060273,20061017-20061274 27 4.8
08_02_1485 - 27466761-27467753 27 6.3
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 27 8.3
05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014 27 8.3
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544... 27 8.3
03_05_0751 - 27389910-27392105 27 8.3
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 8.3
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 8.3
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 128 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 226
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 2.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +2
Query: 68 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 232
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 233 GKDMLTVEPRESGGSK 280
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_01_0780 - 6036454-6037992
Length = 512
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 234 ARICSLWSPESREALNNVTLLVAFRIQNARRDVXXIWXAGEI 359
A + +LWSPES E + + Q R+V W G +
Sbjct: 340 AEVAALWSPESGEPITAEMMTEMKYTQAVAREVVRYWPPGPV 381
>09_01_0140 + 2083885-2083969,2084178-2084653
Length = 186
Score = 28.3 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 319 RDATSXPFGSXGRSMLSVFFLNTCITAPKVRD 414
RD+ PFG G S+L+V +++ I K+ +
Sbjct: 154 RDSACPPFGRGGNSVLTVVVIDSTINITKIEE 185
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 227 RLGWLRP*RRSGIIP 183
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 273 PPDSRGSTVSISLPDSARLASALEAFRHNPA 181
PP + G +S +P A LA++L + NPA
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPA 69
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 191 IIPRMVASHHRPLGRVHEPNVRNCGSSRT 105
++P A+H LGR H+ N + GS+ T
Sbjct: 535 LVPPTNAAHQPSLGRDHDSNKKTSGSAGT 563
>05_04_0017 + 17180991-17181074,17181657-17181759,17181794-17182014
Length = 135
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 137 VHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVE---PRESGGSKQC 286
+ +L + G AK + A + ++LA G + V PR+SGGS++C
Sbjct: 80 MESLWKVVGAAKHGGGPVAAMARQLPSALATLGAATVPVGASGPRDSGGSRRC 132
>04_03_1018 +
21753634-21753640,21754282-21754315,21754413-21754432,
21754485-21755782
Length = 452
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 143 ALGRAAGGAKLPSAGLCLNASKAEASLA 226
ALG A P G CLN K+EASLA
Sbjct: 206 ALGLMPSSAASPQLG-CLNVLKSEASLA 232
>03_05_0751 - 27389910-27392105
Length = 731
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 155 AAGGAKLPSAG--LCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 298
A G AK AG + LN SKAE + + ++ E SKQ F S
Sbjct: 246 AGGVAKRQEAGKAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCS 295
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -1
Query: 315 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 190
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 234 ARICSLWSPESREALNNVTLLVAFRIQNARR 326
AR C W PESR ++ V ++A ++R+
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRK 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,924,408
Number of Sequences: 37544
Number of extensions: 219722
Number of successful extensions: 554
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -