Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30276
         (426 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43122| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.003
SB_9060| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.003
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   2.8  
SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)                  28   3.7  
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_43122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 1  DCSPIKRERELGLDRRET 54
          DCSP  RERELGLDRRET
Sbjct: 32 DCSPTNRERELGLDRRET 49


>SB_9060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 1  DCSPIKRERELGLDRRET 54
          DCSP  RERELGLDRRET
Sbjct: 17 DCSPTNRERELGLDRRET 34


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 100 CSVREEPQFRTFGSCTRPSG 159
           CS R  P+ R F +CT PSG
Sbjct: 437 CSARTPPRRRPFTACTSPSG 456


>SB_34584| Best HMM Match : Drf_FH1 (HMM E-Value=0.99)
          Length = 217

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 138 FMHSAERPVVRSYHPRDYA*TPLRPKPA*PNPARICSLWSPESREALNNVTLLVAFRI-- 311
           F H +  P+ R +HP      PL P+    +   +  ++ PESREA   V   V  RI  
Sbjct: 153 FHHESNEPLPRMFHPESN--EPL-PRMFTESNEHLPRMFHPESREAAVVVKPFVPVRIAH 209

Query: 312 QNA 320
           QNA
Sbjct: 210 QNA 212


>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 99  LLSTRGTAVSDIWFMHSAERPVVRSYHPRDY 191
           LLS  G A++D+  +H A+ P   +Y P  Y
Sbjct: 151 LLSAFGMALADV--VHEAQEPCAHTYEPDSY 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,637
Number of Sequences: 59808
Number of extensions: 228929
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)