Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30273
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 35 0.005
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.47
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.4
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 1.9
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 1.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 2.5
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 26 2.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 4.4
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 4.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 4.4
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 25 5.8
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 5.8
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 25 5.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 5.8
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc... 25 5.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.7
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 25 7.7
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 25 7.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.7
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 35.1 bits (77), Expect = 0.005
Identities = 26/105 (24%), Positives = 57/105 (54%)
Frame = +2
Query: 23 QKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKK 202
+K+Q+ + ++ +E+QKQ+ R K LKK EA K + ++ + E+R+ ++
Sbjct: 652 KKQQELERQKREEKQKQKEREKKLKK-QQQEADREKMAREQRLREEEEKRI-LEERKRRE 709
Query: 203 KLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKK 337
KL + + E+ ++ LEK +E+ + ++A++ +F K+
Sbjct: 710 KLDKEEEERRRRELLEKESEEKERRL---REAKIAAFFAPNQTKE 751
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 302 VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 195
V+PF R + P A P R P + +GH V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 269 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 162
PS+++ S S+SL + +SFC+ + CR+ R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +2
Query: 86 KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKLFEGDLE-KLNKDFLEK 253
KALKK + + K+PP V+ K++R VD + + KL E KL+ L +
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNE 1172
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 1 KYDLEXEAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQA--PAQNSSSVQVRE 168
K DLE E+ E L+ + +RK +A + Q ++ +A P + SS + R+
Sbjct: 270 KLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESSKKRKRD 327
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 2.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 281 RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 186
R + P P R P ++ +GH +++C R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 2.5
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +2
Query: 59 ERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDT---RSYDDKKK---LFEGD 220
ER+K + R K L+K L E + + + + + + + ++D + Y K L+
Sbjct: 70 ERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR-KCQIDLMYIKEYPPLTKYVSLYAEG 128
Query: 221 LEKLNKDFLEKVWQERAEQFGGRQKARLP 307
+ ++ ++W E E+F +K ++P
Sbjct: 129 TSEQTEETRNRIWAEMEERFNSGRKHKIP 157
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 47 KELKERQKQQLRHKALKKGLDPEALTG 127
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 185 SYDDKKKLFEGDLEKLNKDFLEK 253
S DKKK+ +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +1
Query: 13 EXEAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILR 192
E + KE K A+ +A EA + E R H Q AQ + + A R R
Sbjct: 775 ERQRKEI-FEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKER 833
Query: 193 RQKE 204
Q+E
Sbjct: 834 EQRE 837
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 19 EAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQV 162
E + L KR QR + QE R RSA ++A ++N+ +QV
Sbjct: 8 EENDLDLEEKRLQR------QLNEIQEKKRLRSAQKEASSENAEVIQV 49
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 1 KYDLEXEAKETGLRLK 48
KYDLE E ETG LK
Sbjct: 12 KYDLEIEPNETGSTLK 27
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 290 QKARLPKWFGERP 328
QK RLP+W G+ P
Sbjct: 84 QKDRLPRWIGDNP 96
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 218 DLEKLNKDFLEKVWQERAEQFGGRQKAR 301
DLEKL+ +F EKV +E E + +K R
Sbjct: 300 DLEKLHSNFAEKV-KEEQELYKSLEKKR 326
>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 211
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 164 ERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVW 259
E ++T + + + GDL+ LNKD K W
Sbjct: 80 EPNLETIKSEKLNERYYGDLQGLNKDDARKKW 111
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 194 DKKKLFEG--DLEKLNKDFLEKVWQERAEQFG 283
DKKK+ + +++ + LEK W+E FG
Sbjct: 1012 DKKKIQDTVKSIDRFKRSALEKTWREVNSSFG 1043
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 212 RTVSFCRRRIVCRHASRTWTLLEF 141
+T+ C R I R+ S TWT + +
Sbjct: 7 KTLHVCLRLISLRNCSNTWTFVPY 30
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 32 QDYDLKELKERQKQQLR 82
+ Y++KEL E QKQ +R
Sbjct: 24 EGYEIKELNESQKQYIR 40
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 141 KFK*RPSTRGVSTHDPTTTK 200
+FK RPST+ ST D TK
Sbjct: 1086 EFKPRPSTKPFSTQDEVLTK 1105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.125 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,728
Number of Sequences: 5004
Number of extensions: 17870
Number of successful extensions: 110
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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