Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30272
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.003
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.9  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.9  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   2.9  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   3.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   5.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   5.1  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   5.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   5.1  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   5.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   6.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.7  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.9  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   8.9  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.9  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.003
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 306 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 443
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 KRIPTIPTMETWTPFPTARAIVTE 186
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 271 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 411
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 512 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 423
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 347
           +G GM+AF++  P     P+  +VY    RR T  ++
Sbjct: 9   LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 252 AAFMYRQPEAAQAPSTGQVYIP 317
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 345 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 473
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 127 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWP 255
           T P +ET  TP   A    TE      V+TI TTTP + A++ P
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP-MEAMITP 257


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 249
           T+   TP+PT     T   +  +VTT LT  P    V+
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 306



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 249
           T+   TP+PT     T   +  +VTT LT  P    V+
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 384



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 249
           T+   TP+PT     T   +  +VTT LT  P    V+
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 462



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 249
           T+   TP+PT     T   +  +VTT LT  P    V+
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 540



 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 249
           T+   TP+PT     T   +  +VTT LT  P    V+
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 618



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 136 TMETWTPFPTARAIVTEEAWS*AVTTILT 222
           T+   TP+PT     T   +S +VTT LT
Sbjct: 659 TVYVETPYPTTVTTTTTVGYSGSVTTTLT 687


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 202 AVTTILTTTPELWAVVWPRS 261
           A T IL TTPE W VV  +S
Sbjct: 386 AETQILVTTPEKWDVVTRKS 405


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 272 LAVHERGHTTAHSSGVVVRIVVTAHDQASSVTIA 171
           L  H+R  +  H+S  +V I+V +HD AS+   A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 363 QENEVYYPQQPENPIFSPTQATELADPTE 449
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 211 TILTTTPELWAVVWPRS-CTASPKPHRRLQRARCTYLI-VAARPLPIPATYRNKKTKSIT 384
           T +TT   +W  VW  S CT  P+  +R     CT LI    R + +  T   K      
Sbjct: 392 TTVTTNTNIW-WVWAESRCTEIPE-SKRTVFPNCTMLIDKTGRLIILQQTVPQKPVALTA 449

Query: 385 LSNQR 399
            SN+R
Sbjct: 450 SSNKR 454


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 390 QPENPIFSPTQATELADPTEKIELYSTTLVPVAKATEAPAAP 515
           +  +PI    +A     PT  +  YST     A+ TE+P  P
Sbjct: 385 ETNSPIIENKEANNFLAPTSNVPAYSTP----ARPTESPPPP 422


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 SGDSNRGGLVMSRYYNPYYNPRAV 239
           S D N  G + S  YNP  +PR +
Sbjct: 346 SNDGNHWGSLSSTIYNPSSSPRTI 369


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 351 YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIEL 461
           +VP  E   Y P++P    FSP+  + L  P EK+ +
Sbjct: 712 FVPINE---YIPRRPFITKFSPSHDSRLVIPLEKLRI 745


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 156 LSYGSGDSNRGGLVMSRYYNPYYNPRAVGGG 248
           +++GSG++N G L  +++    Y P  +  G
Sbjct: 519 VTFGSGNTNIGSLRQTKFKQSNYTPPELNDG 549


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 283 HRRLQRARCTYLIVAARPLPIPATYRNKKTK 375
           H R++     Y+ ++A   P P+  R+K +K
Sbjct: 469 HHRIELGLGDYISISASSFPFPSVIRSKYSK 499


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 126 YNPYYGNVDSLS---YGSGDSNRGGLVMSRYYNP 218
           Y  +  N+D LS   +GS +S R     S+YY+P
Sbjct: 604 YEQHSFNLDDLSNTNFGSNNSLRHAKSFSKYYSP 637


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 355 YRNKKTKSITLSNQRTRSSAPLKRPNWLT 441
           +R+     I L ++  RSS   K PNWL+
Sbjct: 789 HRDDYASIILLDSRYNRSSIQRKLPNWLS 817


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,822
Number of Sequences: 5004
Number of extensions: 43938
Number of successful extensions: 172
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)