Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30272
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 36 0.020
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 29 2.3
SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 28 4.0
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22) 27 6.9
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 35.9 bits (79), Expect = 0.020
Identities = 30/102 (29%), Positives = 36/102 (35%)
Frame = +1
Query: 124 PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 303
PT T T TP TA T E + TT TTTPE + KP +
Sbjct: 1772 PTTTTTTTTTPETTAPRTTTPETTTPETTTPRTTTPE------------TTKPRTTTPKT 1819
Query: 304 RCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 429
AA+ P+P T+ T N T A K P
Sbjct: 1820 TTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861
>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 31.1 bits (67), Expect = 0.56
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = +3
Query: 270 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 449
Q E A A S V +P+R QT + S P+Q N+V PQ E P S T A LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679
Query: 450 K 452
+
Sbjct: 680 Q 680
>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1346
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +3
Query: 324 RRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTTLVPVAKATEA 503
R T T + +EV +QP+ P+ + T TE+A PT K+ S+T +P T
Sbjct: 973 RTTTQKATYSLESTTSEVKLTKQPKIPVSNLTITTEIAAPT-KLTPPSSTELPA--PTRD 1029
Query: 504 PAAP 515
PA P
Sbjct: 1030 PAQP 1033
>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 162 YGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQ 287
YG + G V++ Y P Y A GG A ++ QP A +
Sbjct: 142 YGRNAPHPGSTVLTVYRRPTYRAIATPGGACATLFLQPGAGR 183
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 29.1 bits (62), Expect = 2.3
Identities = 26/85 (30%), Positives = 33/85 (38%)
Frame = +1
Query: 124 PTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQRA 303
P T T TP T T E + TT TTTPE P+ TA+ K + A
Sbjct: 181 PETTTPRTTTPVTTTPRTTTPETTTPETTTPRTTTPE---TTTPKKTTAAKKAPLPVTHA 237
Query: 304 RCTYLIVAARPLPIPATYRNKKTKS 378
++ A P T R TK+
Sbjct: 238 TTSH---APSTTENPTTARPATTKA 259
>SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.7 bits (61), Expect = 3.0
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = -2
Query: 353 VAGIGKGLAATIRYVHLAR*RRLCGFGLAVHERGHTTAHSSGVVVRIVVTAHDQAS 186
VAG+ T Y H AR R G+G A RG T H GV R T + A+
Sbjct: 12 VAGVWTRSTVT-GYRHAARSR---GYGHAARSRGIDTQHGHGVWTRSTFTGYRHAA 63
>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = +1
Query: 235 LWAVVWPRSCTASPKPHRRLQRARCTYLIV--AARPLPIPATYRN 363
+W + W S P+ HRR + R + + P P T +N
Sbjct: 703 VWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPGTQKN 747
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 276 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 443
+ AQAPST Q+ + R++T S Q + P + P + + P Q A P
Sbjct: 181 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 240
Query: 444 TEKIELYSTTLVPVAKA 494
T + + + L P A A
Sbjct: 241 TSRQQETAAPLSPFAAA 257
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 276 EAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYP---QQPENPIFSP-TQATELADP 443
+ AQAPST Q+ + R++T S Q + P + P + + P Q A P
Sbjct: 848 QTAQAPSTPQIQLSIMRQETPESDSEATQTYLHIENPVSTRPPTDNVNEPDIQPNTRAQP 907
Query: 444 TEKIELYSTTLVPVAKA 494
T + + + L P A A
Sbjct: 908 TSRQQETAAPLSPFAAA 924
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 5.3
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 273 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEV-YYPQQPENPIFSPTQATELADPTE 449
PE +AP T P+ T+A + +PQ+ + PE + T ATE + E
Sbjct: 4455 PETTEAPGT--TVAPET---TMAPETTIPQETTIAPESTEAPETTMAPETTATESTETPE 4509
Query: 450 KIELYSTTLVPVAKATEAPAA 512
+ TT+ P + T AP A
Sbjct: 4510 TTIVPETTVAP--ETTMAPEA 4528
>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 344 IGKGLAATIRYVHLAR*RRLCGFG 273
I G+A ++ V L R RRLCG G
Sbjct: 91 ISPGMANRVQSVRLGRRRRLCGLG 114
>SB_11980| Best HMM Match : dCMP_cyt_deam (HMM E-Value=1.2e-22)
Length = 432
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 249 MAAFMYRQPEAAQAPSTGQVYIPDRRRQTLAD 344
+A FM P A P+TG VY+ D R D
Sbjct: 50 LALFMRESPWADGEPTTGAVYVQDNGRLLSVD 81
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 27.1 bits (57), Expect = 9.2
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +3
Query: 213 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQ 392
N Y P A G AA P P Q + + Q + PQ + QQ
Sbjct: 365 NSYTGPTA-GPTAAATAAGTPPQPTQPQASQPTMKPQDTQQAQQQTLQPQGTQQQVTQQQ 423
Query: 393 PENPIFSPTQATEL 434
P P PT A +L
Sbjct: 424 PTQPPQLPTMAPQL 437
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,798,900
Number of Sequences: 59808
Number of extensions: 380831
Number of successful extensions: 1154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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