Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30270
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   0.95 
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   1.3  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   1.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   6.7  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    25   8.9  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 24/85 (28%), Positives = 40/85 (47%)
 Frame = +3

Query: 129 SHMHKLAELIPGPAPIPIFGNALTLMRKDPHELVNLALGYAQTFGNVVRVWLGSKLIVFL 308
           SHM  + E IP P  +P +G    L+  DP +  N    +      V  V+  + +  FL
Sbjct: 365 SHMDDIRE-IPRPTDVPDYGLLNDLLWSDPADTEN---DWEDNERGVSFVFNKNVIRQFL 420

Query: 309 ADADDIEIILNSHVHIDKATEYKFF 383
           A   D ++I  +H+ ++    Y+FF
Sbjct: 421 A-KHDFDLICRAHMVVEDG--YEFF 442


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
 Frame = +3

Query: 264 NVVRVWLGSKLIVFLADADDIE---IILNSHVHIDKATEYKFFKPWLGEGLLISSGPKWR 434
           N   +W    ++++LAD  D E    +   H    K  +Y FF+   G+G++      W 
Sbjct: 64  NDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQA-SGQGIIWGQA-GWF 121

Query: 435 S--HRKMI--APTFHINILKSFVGI 497
           S  H++++  A T + N +K  +G+
Sbjct: 122 SVYHQELVISAITRYRNEIKRVLGV 146


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 195 LTLMRKDPHELVNLALGYAQTFG---NVVRVWLGSKLIVFLADADDIEIILNSHVHIDKA 365
           L+++ K  + L++  + + Q+     N   V L S++I  ++  +D+E+I+NS     K 
Sbjct: 733 LSILLKSKNLLIDTIISHLQSSTIHLNEESVCLLSRIIAVISKEEDLELIINSFTCAQKP 792

Query: 366 TE 371
            E
Sbjct: 793 VE 794


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 281 PNADDVAKCLRIAQSEVD*FVGIFP-HESQSISENRNRCRSRYQFSKFV 138
           P   ++A+C+R  +S+      + P H S + SE R RC   Y   K +
Sbjct: 821 PGVSNIARCIREIKSKDGSKFEVLPLHASLNTSEQR-RCFKTYTKRKII 868


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 356 NMDMAVKDYFNIISVS*KNDQLGAQPNADDVAKCLRIAQSEVD*FVGIFPHESQSISE 183
           +++ A+ D  NI+    K+++L     A D+  C+R+  S  +   GI+ H  +   E
Sbjct: 387 DLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLI-SVGEKTPGIYQHAIKQYGE 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,382
Number of Sequences: 5004
Number of extensions: 50260
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)