Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30269
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.3
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 27 1.7
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar... 26 2.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 2.9
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 3.8
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 5.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 25 6.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.7
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 25 8.9
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 8.9
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 25 8.9
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 8.9
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 8.9
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 137 VKMFLGPKYDENGFPFSLEDNWMNFY----ELDWFVQKVNPGQSQI 262
+++FL P +G + +D W++FY E DW N G + +
Sbjct: 338 LRIFLFPAVLYSGLQWGAQDAWLSFYLTTEEEDWMEAPYNYGDNAV 383
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +2
Query: 227 FVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYK--LLDQGKIPTDMFNSSDTMPSRLML 400
F+ VNP ++ TR + ++SLPMA Y L + + + P +
Sbjct: 258 FISSVNPLEADDTRETLSEGALVQESLPMAYSYSDTNLVVSRDSFTLTGDDNLFPEGGLR 317
Query: 401 PKGTYDG 421
P T DG
Sbjct: 318 PANTIDG 324
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/34 (26%), Positives = 15/34 (44%)
Frame = +2
Query: 221 DWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEI 322
DW + K+ P ++T D FF + P +
Sbjct: 82 DWVIVKLGPSSGRVTGCEIDTTFFNGNHAPEVSV 115
>SPAC3H5.04 |aar2||U5 snRNP-associated protein
Aar2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 80 HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNW 202
H+ +ID S T ++ K L YDEN +PF +W
Sbjct: 58 HEDMKYSIDFDSKSETASLQK--LDVLYDENFYPFESTKDW 96
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = +2
Query: 53 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 157
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -1
Query: 342 PWSKSL*ISAIGKE-----SSLKNAKSVDERVI*DWPGLTFCTNQSSS*KFIQLSSRLKG 178
PWS++ S G +S+K+A + + I + L N + KF KG
Sbjct: 5 PWSRNFLCSCRGFSVCTPYASIKSASELALKNISELQALQKIQNHTEKLKFFSSKLHNKG 64
Query: 177 KPFSSYLG 154
+PF+ LG
Sbjct: 65 EPFTLQLG 72
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 516 NGLLSGTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVG 349
+ L + + N +++ G+Y N NS N + S SL+G+ S LN S G
Sbjct: 554 SSFLGSSGNNNNNNNSNSGNYN--NNNSGNNNQQHQQSSS-SLQGLASSFLNSSSG 606
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 212 YELDWFVQKVNPGQSQITRSSTDF 283
Y DW ++ SQ+ R ST+F
Sbjct: 1123 YSFDWEAYMIDISSSQLKRKSTEF 1146
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 330 SWTKERFLLTCSTPRTLCL 386
SW+K FLLT S RT+ L
Sbjct: 262 SWSKNDFLLTSSADRTVRL 280
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 398 LPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNK 511
L + T D ++ ++FV+ E +P+ E S++ DNK
Sbjct: 2232 LLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDNK 2269
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 89 FTVTIDIKSDVATNAVVKMFLGPKYDENGFPFS 187
FTV++ + DVA++ + P +N FP S
Sbjct: 115 FTVSVPVDVDVASHVNISSPSAPSLSDNLFPGS 147
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 464 SVHTDRRIQTAGRGIHRMY 408
S HT RR QT+G+ H+ Y
Sbjct: 76 SGHTKRRSQTSGKKTHQPY 94
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 318 KSTSSWTKERFLLTCSTPRTLCLQ 389
K S+ TKE LL C T T C Q
Sbjct: 279 KKHSNLTKEELLLRCLTLTTSCRQ 302
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 233 QKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPTDMFNS 370
Q N Q +T +T ++ +SLP+ + + IPT +N+
Sbjct: 112 QNTNTTQVSLTNGTTTNSYSNTNSLPITDTINGTTELIIPTTSYNN 157
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 185 SLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKL 331
SL +N +N Y D + V G + + SST A E LP+ ++KL
Sbjct: 247 SLANN-LNLYSADGYAVDVFQGINNLNLSSTSLADVAE--LPVHTLHKL 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,369
Number of Sequences: 5004
Number of extensions: 38897
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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