Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30269
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 33 0.11
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019) 31 0.74
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7) 30 1.3
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25) 30 1.3
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15) 28 5.3
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) 27 6.9
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 27 9.2
SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1) 27 9.2
SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029) 27 9.2
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0) 27 9.2
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029) 27 9.2
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 27 9.2
SB_45850| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08) 27 9.2
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +2
Query: 128 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
N V ++ PK ++ P S+ D WM+ +E FV+K+N Q+ + SS F K+ +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303
Query: 308 PMAEIYKLLDQ 340
+ +I L+ +
Sbjct: 304 TLEKIPVLIHE 314
>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
Length = 736
Score = 30.7 bits (66), Expect = 0.74
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Frame = +2
Query: 215 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 376
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463
Query: 377 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVV 499
+ S + G DG P + + + +E P +E + +++
Sbjct: 464 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNALL 507
>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
Length = 359
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = +2
Query: 215 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 376
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314
Query: 377 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 493
+ S + G DG P + + + +E P +E + +
Sbjct: 315 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 356
>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
Length = 867
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = +2
Query: 215 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 376
E WF Q +N +S + R +T F D +P+ +I + +D+ +IPTD++ SS
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549
Query: 377 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 493
+ S + G DG P + + + +E P +E + +
Sbjct: 550 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 591
>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
Length = 378
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 306 YRWPKSTS-SWTKERFLLTCSTPRTLCLQG*CCLRVH 413
Y WP S + +K +F +C+T QG CLR H
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLRFH 301
>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
Length = 549
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 158 KYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
K + F S+ + ELDW+V ++ + I R D + + SL
Sbjct: 479 KISKGNFESSMIISSQGMAELDWWVNNIDNSFNDINRPPIDITIYSDASL 528
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 158 KYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
K + F S+ + ELDW+V ++ + I R D + + SL
Sbjct: 205 KISKGNFESSMIISSQGMAELDWWVNNIDISFNDINRPPIDITIYSDASL 254
>SB_58782| Best HMM Match : Hormone_5 (HMM E-Value=2.1)
Length = 215
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +3
Query: 270 HLLTLHSSKKTLYRWPKSTS-SWTKERFLLTC-STPRTLCLQG*CCLRVHTMDSPSSCL 440
H++ + S L P S ++TC TP LC+ G C + M S S CL
Sbjct: 58 HMIPMFSGSHCLSLTPLSRRFCHVTPHVIVTCFQTPHRLCINGTCMGHMIPMFSGSHCL 116
>SB_54087| Best HMM Match : RnaseH (HMM E-Value=0.0029)
Length = 318
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 158 KYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
K + F S+ + ELDW+V ++ + I R D + + SL
Sbjct: 8 KISKGNFESSMIISSQGMAELDWWVNNIDISFNDINRPPIDITIYSDASL 57
>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
Length = 563
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 289 LQRRLFTDGRNLQALGPRKDSY*HVQLLGHYAFKADAA*GYIRWIPLPAVCIRLSV 456
L +RL+T+ R + L +KD+Y V++ + A +W P + + SV
Sbjct: 8 LVKRLYTNPRRIFGLPEQKDTYVDVEIGSEWTIPKAMAYSRAQWTPFAGMKVFGSV 63
>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
Length = 266
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 164 DENGFPFSLEDNWMNFYELDWFV-QKVNPGQ-SQITRSSTDFAFFKEDSLPM 313
D+NG P +L+D W + E+D V V P Q QI D +E P+
Sbjct: 193 DKNGNPITLKDLWPSDEEIDAIVAASVKPEQFKQIYIPMFDLGTIEEAESPL 244
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 158 KYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
K + F S+ + ELDW+V ++ + I R D + + SL
Sbjct: 205 KISKGNFESSMIISSQGMAELDWWVNNIDISFNDINRPPIDITIYSDASL 254
>SB_45850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 158 KYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 307
K + F S+ + ELDW+V ++ + I R D + + SL
Sbjct: 89 KISKGNFESSMIISSQGMAELDWWVNNIDISFNDINRPPIDITIYSDASL 138
>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 353 TDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPD 505
T N S T S L +GT +P Q YP P + + S +P+
Sbjct: 431 TSQRNRSSTNESYLRASRGTSQPYPSQSQNTAYPESPDTPQPQASSSFLPE 481
>SB_4115| Best HMM Match : Homeobox (HMM E-Value=9.4e-08)
Length = 267
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 302 SLPMAEIYKLLDQGKIPTDMFNS-SDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKES 478
SL + L Q T ++ + ++PS + D F Q F P++PTP+
Sbjct: 161 SLAATSLEASLSQSVTATPLYQPLTQSLPSNNLHQSHHEDSFLDQQFADQSPWQPTPESC 220
Query: 479 EPFKSVVPD 505
+ +PD
Sbjct: 221 IEYTQPLPD 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,580
Number of Sequences: 59808
Number of extensions: 281741
Number of successful extensions: 674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -