Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30269
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50070-12|CAA90398.2|  554|Caenorhabditis elegans Hypothetical p...    27   6.0  
AL032651-3|CAB60582.1|  554|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z50070-12|CAA90398.2|  554|Caenorhabditis elegans Hypothetical
           protein F43G6.5 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +2

Query: 59  VRQPRLNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYE-LDWFVQ 235
           ++   +N K F    D K  V        F+G ++DEN     L  +   F   +D+  +
Sbjct: 414 IKLAHINPKKFKAAKDPKKSV-------WFIGLQFDENVKNLDLTKDIQQFKRNIDYQAK 466

Query: 236 KVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKI 349
            V   ++      TDF++ K   L      K L QGK+
Sbjct: 467 SVKDIEANCA-VETDFSYVKRSDLAQTISVKDLKQGKM 503


>AL032651-3|CAB60582.1|  554|Caenorhabditis elegans Hypothetical
           protein F43G6.5 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +2

Query: 59  VRQPRLNHKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYE-LDWFVQ 235
           ++   +N K F    D K  V        F+G ++DEN     L  +   F   +D+  +
Sbjct: 414 IKLAHINPKKFKAAKDPKKSV-------WFIGLQFDENVKNLDLTKDIQQFKRNIDYQAK 466

Query: 236 KVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKI 349
            V   ++      TDF++ K   L      K L QGK+
Sbjct: 467 SVKDIEANCA-VETDFSYVKRSDLAQTISVKDLKQGKM 503


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 155 PKYDENGFP---FSLEDNWMNFYELDWFVQKVNPGQSQIT 265
           PK+ EN  P    S    W NF+E D  VQ V+   + +T
Sbjct: 279 PKFAENWIPENMLSRSPTWKNFFENDVTVQFVHRNLAYLT 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,561,980
Number of Sequences: 27780
Number of extensions: 209062
Number of successful extensions: 579
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)