Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30269
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    31   0.61 
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   1.9  
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta...    28   4.3  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    28   4.3  
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    27   5.7  
At5g54350.1 68418.m06768 expressed protein  ; expression support...    27   9.9  

>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 477 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 361
           D +G G+YG         N  +V +  +SLE IV E+LN
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIVQEDLN 62


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
            SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
            gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -1

Query: 498  TTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSV 352
            T+DL G+ S  +G Y      SW G P+ V L     E ++SE+ N +V
Sbjct: 1089 TSDLVGAKSRNIG-YLKGKVPSWVGIPTSVALPFGVFEKVISEKANQAV 1136


>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 354

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 2   FNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVVKMFL 151
           F TV+  + E+  + H Y+ RQPR   +   + +   S +    ++  FL
Sbjct: 199 FRTVFGQQREVFRASHAYRTRQPRNQFREEEINVAGPSCLTIIQILPFFL 248


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 477 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELN 361
           D +G G+YG         N  +V +  +SLE I  E+LN
Sbjct: 24  DEIGKGAYGRVYIGLDLENGDFVAIKQVSLENIGQEDLN 62


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 80  HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQ 259
           H+ F      K+D  T A V MFL  K +E   P  L+D     YE+   + K +PG SQ
Sbjct: 89  HRFFFRQSHAKNDRRTIATVCMFLAGKVEET--PRPLKDVIFVSYEI---INKKDPGASQ 143


>At5g54350.1 68418.m06768 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 504 SGTTDLNGSDSLGVGSYG*TNTNSWKG-NPSY 412
           S T D+N   +LG  S+  TN +SW   +PS+
Sbjct: 114 SSTNDINLDLTLGPSSWSNTNPSSWSNTDPSF 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,610
Number of Sequences: 28952
Number of extensions: 200569
Number of successful extensions: 564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)