Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30265
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.31 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.41 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   0.95 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   5.1  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    25   8.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   8.9  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   8.9  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 358 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 212
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 424 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 245
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 244 KSSSWVSPSEA 212
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 383
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 484  STQSLIDLAATVFFEKSIFWTSE 416
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 75  NLSNVLKNGNDNFTARMFTEVV 140
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 14  KHEDNHLFVYYRHRGNGSRHKSL*CAQKW 100
           K E   +F YY  R  GS  +   CA  W
Sbjct: 657 KKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -2

Query: 143 FHYFGKHSGCEVIVS---IFEHIREICDGCHCRDGDSKQTNDCLH 18
           F  FG+H  CEV+++   +     EI  G H  D D  +    LH
Sbjct: 59  FWRFGRHKSCEVVLNGPRVSNFHFEIYQG-HRNDSDESENVVFLH 102


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/82 (23%), Positives = 40/82 (48%)
 Frame = -3

Query: 334 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERTTLF 155
           SS P + + +  + + SV  +S  G+P +  SSS  S  + ++       + N E++   
Sbjct: 95  SSNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYNDEKSVNA 154

Query: 154 PGLFFTTSVNILAVKLSFPFLS 89
             L  TT   + ++++++  LS
Sbjct: 155 SAL-RTTEDRLRSMEMAYAQLS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,501
Number of Sequences: 5004
Number of extensions: 40432
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)