Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30265
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 42 3e-04
01_01_1152 + 9170628-9171899 35 0.034
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 1.3
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 1.7
02_01_0384 - 2781362-2782299,2782320-2782428 29 2.2
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 2.9
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 3.9
01_06_0373 - 28841462-28842850 28 5.1
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 6.8
10_02_0112 + 5385660-5385821,5386337-5386876 27 6.8
08_01_0123 + 974941-975186,975274-977505 27 6.8
05_06_0044 - 25150322-25151260 27 6.8
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 27 8.9
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 27 8.9
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 27 8.9
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 41.9 bits (94), Expect = 3e-04
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Frame = +3
Query: 156 KSVVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 311
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 312 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 488
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 489 NTNNRIKD 512
T RIKD
Sbjct: 152 ATAGRIKD 159
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.1 bits (77), Expect = 0.034
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 153 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 329
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 330 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 506
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 --SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 507 KDL 515
+D+
Sbjct: 176 RDV 178
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 347 VRHFKLNAFN*SKVTAFTREFCSYSIVVREADSFQKLFMGFTIRS 213
VRH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 264 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 389
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 334 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 167
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 282 TEFASKSRDLRSIKGVELKMANKVYVHDG 368
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 322 LIDRRSRLLLANSVRIASSSGK 257
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 165 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 308
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 282 TEFASKSRDLRSIKGVELKMANKVYVHDG 368
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 30 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSVVLSAFSVLPPLAQ 203
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 204 LALASDGETHEELLK 248
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 129 TEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 269
T ++ +P +L L +A A A+DG H L +G PDD
Sbjct: 617 TNILNYSPCSVAILVDRGSLSTVAAAAAAADGFPHRVALYFLGGPDD 663
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 351 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDL 515
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDI 55
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 128 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 24
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 128 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 24
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 365 IMNVYFVRHFKLNAFN*SKVTAFTREFCSYSIVVREADSFQKLFMGFTIRS 213
++N+ VR ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 134 VLNI--VRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,019,076
Number of Sequences: 37544
Number of extensions: 256080
Number of successful extensions: 803
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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