Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30264
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 28 0.95
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 28 0.95
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 1.3
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 27 1.7
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 1.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 2.9
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.7
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 6.7
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 25 8.9
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz... 25 8.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 8.9
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = -1
Query: 162 WFDRIL--IESFQVPEYYICR-SLNGYFSFTSF--LV*SQNLVDMLTRSQI 25
W+ R+L I+SF Y+ICR S+ F +F + +NL +++S +
Sbjct: 107 WYSRVLFLIQSFPTRLYHICRNSIKSILQFQNFSNIFAKKNLFPKVSKSDV 157
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.9 bits (59), Expect = 0.95
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 361 LMHGKD--PQVLDGTQLAADWTFSGLQKFGQGLEERLRGLKHPSKILE 498
+ +GKD + +G Q + F+G F R G K P K+LE
Sbjct: 1159 ISNGKDVIENIHEGDQAEISFHFTGTPPFSFSYARRALGKKRPGKVLE 1206
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 223 FSKPLVLFMGPWSGGKSSIVNYLTGLEFTEWSLRTGAEPSPAYFNI 360
F+KPL +G +SS+ N+L+ + T + +T YF +
Sbjct: 376 FNKPLFKLLGSLVEHRSSVPNHLSHMSITRFEDKTKKSRQYRYFTL 421
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 91 ITVERSADIVLRDLKRLYENSIKPLEGLYKY-RDLSNR--HFGDPE 219
+ + + + L ++ LYE+ IKP + YKY R + +R HF E
Sbjct: 450 LMAKETKGLTLEEVNELYESDIKPWDS-YKYVRQIESRRIHFSKEE 494
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +1
Query: 61 RLDEEASEAEITVERSADIVLRDLKRLYENSIKPLEGLYKYRDLSNRHFGD---PEIFSK 231
+L E + E +++ S + L D++ +IK E L + +D + H E+ K
Sbjct: 184 KLIEYRAFLEASIDFSEEHELDDIE-----TIKLFEELNEMKDEIDAHIEGGKCKEVLRK 238
Query: 232 PL-VLFMGPWSGGKSSIVNYLTGLEFTEWSLRTG 330
+ V +GP + GKSS++N L + S ++G
Sbjct: 239 GINVAILGPSNAGKSSLINLLANRRISIVSPQSG 272
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 457 PPILDQTSASQRTSNRRPVAYRPKLEDLFHALGY 356
PP + +S++ + PVAY+P + + LGY
Sbjct: 367 PPTVQTSSSAAPVDSAEPVAYQPIKKPIDPMLGY 400
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 97 VERSADIVLRDLKRLYENSIKPLEG--LYKYRDLSNRHFGDPE--IFSKPLVLFM 249
+ R A +L D+K + +N K LEG L + R L + + E IF K L L +
Sbjct: 203 LRRWACSILSDVKTISDNEFKILEGPLLQEIRSLDQKKENENEMQIFLKGLSLLL 257
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 LLTGEIPENLRSREHINQILRLDEEASEAEITVERSADIVLRDLKRLYE------NSIKP 162
L+ GE + + + +Q LR + SEA TV L +LK+ YE NS+ P
Sbjct: 683 LIRGEQKVSHSNCLYADQTLRPSQPPSEALKTVVNQLTNELMELKKRYEKLSDRYNSLTP 742
Query: 163 LEGLYKYRDLSNR 201
+K +++ N+
Sbjct: 743 GYHKHKRQEIKNK 755
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 217 EIFSKPLVLFMGPWSGGKSSIVNYLTGLEFTEWSLRTG 330
+IF K + GP S G S+I+ T+W LR G
Sbjct: 185 DIFEKSVAHLPGPLSAGGSAIILGWLNTVCTDW-LRAG 221
>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +1
Query: 28 LRSREHINQILRLDEEASEAEITVERSADIVLRDLK 135
++SRE ++Q+L+LDE ++ + R + ++R +K
Sbjct: 182 VQSREEVSQLLKLDE---YIDLVIPRGSTNLVRHIK 214
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 436 KFGQGLEERLRGLKHPSKILEKVNIVE 516
KF + E+LRG P+ + + NI+E
Sbjct: 952 KFSSDMYEKLRGFLKPTNLTIQRNIIE 978
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,874
Number of Sequences: 5004
Number of extensions: 44195
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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