Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30264
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52586| Best HMM Match : Hexokinase_2 (HMM E-Value=0.85)             30   0.98 
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        29   1.7  
SB_36001| Best HMM Match : CheD (HMM E-Value=3.9)                      29   3.0  
SB_35394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_16625| Best HMM Match : Death (HMM E-Value=1.5)                     28   5.3  
SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)                  27   9.2  
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         27   9.2  

>SB_52586| Best HMM Match : Hexokinase_2 (HMM E-Value=0.85)
          Length = 356

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +1

Query: 82  EAEITVERSA----DIVLRDLKRLYENSIKPLEGLYKYRDLSNRHFGDPEIFSKPLVLFM 249
           E E+T+E++     D  +R    L       ++ + +Y    +   G+ E  S+P++L  
Sbjct: 138 EKELTLEQTEAAAHDSFVRSRGALLLGRHNEVKQVMEYITREHEPLGNEESDSRPIMLVQ 197

Query: 250 GPWSGGKSSIVNYLT 294
           G    GKSS+V Y T
Sbjct: 198 GVPGSGKSSLVAYCT 212


>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
 Frame = +1

Query: 16  IPENLRSR--EHINQILRLDEEASEAEITVERSADIVLRDLKRLYENSIKP----LEGLY 177
           IP+ LR R  E +   +R  E  S A   + R   +  + +  + +N I+     +    
Sbjct: 77  IPKRLRGRLREDLPIRIRKSEHQSIASTEMYRENVVGTKSVSNITQNVIEMNIVLIRWFA 136

Query: 178 KYRDLSNRHFGDPEIFSKPLVLFMGPWSGGKSSIVNYLTG--LEFTEWSLR 324
            Y+D+     G  +  S  LV  +GP   GKS+++N L G   +F + S++
Sbjct: 137 DYKDIIKDVSG--KFKSGELVGVLGPSGAGKSTLINVLAGYRTKFADGSIK 185


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 31   RSREHINQI----LRLDEEASEAEITVERSADIVLRDLKRLYENSIKPLEGLYKYRD 189
            +S +H N+     ++L      +E+  +      +  L+ +YEN I  LEG+ K +D
Sbjct: 971  QSEKHANEFESLKVQLCRNLENSELEKDEVMKAEMNQLRSIYENQISKLEGILKEKD 1027


>SB_36001| Best HMM Match : CheD (HMM E-Value=3.9)
          Length = 313

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 435 LQARERPIGGQLRTVQNLRIFSMH*DIK-VGGRWFSTCSQGPLC 307
           L A ++ I GQ RTV+NLR+ S+    K  G R     ++ PLC
Sbjct: 58  LAAEKKRIVGQQRTVKNLRLISLEDFAKSEGDRVLFRPNKRPLC 101


>SB_35394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 178 KYRDLSNRHFGDPEIFSKPLVLFMGPWSGGKSSIVNYLT 294
           +Y    +   G+ E  S+P++L  G    GKSS+V Y T
Sbjct: 28  EYITREHEPLGNEESDSRPIMLVQGVPGSGKSSLVAYCT 66


>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +1

Query: 289 LTGLEFTEWSLRTGAEPSPAYFNILMHG--KDPQVLDGTQLAADWT---FSGLQKFGQGL 453
           L GL +++ +    A+  P Y  I++    +DP      Q   D T     GLQ FGQ  
Sbjct: 137 LDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAK 196

Query: 454 EERLRGLKHPSKILEK 501
           EE  + +    +I+ K
Sbjct: 197 EEHAKLIPKYHEIMIK 212


>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 483 GVFQAPESLLQSLTKLLQARERPIGGQLRTVQNLR----IFSMH*DIKVGGRWFSTCSQG 316
           GVF+  E+LLQ+L    ++ +    G L+    L+    ++ +H  + + G       +G
Sbjct: 363 GVFEDYEALLQTLRFFKESNDATATGLLKQTSKLKFIGTVYLLHEVLPILGHLSKAFQEG 422

Query: 315 PLCKLQAS*IIHYT 274
            +C    +  I YT
Sbjct: 423 EVCFASIAPAIDYT 436


>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1111

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 483 GVFQAPESLLQSLTKLLQARERPIGGQLRTVQNLR----IFSMH*DIKVGGRWFSTCSQG 316
           GVF+  E+LLQ+L    ++ +    G L+    L+    ++ +H  + + G       +G
Sbjct: 705 GVFEDYEALLQTLRFFKESNDATATGLLKQTSKLKFIGTVYLLHEVLPILGHLSKAFQEG 764

Query: 315 PLCKLQAS*IIHYT 274
            +C    +  I YT
Sbjct: 765 EVCFASIAPAIDYT 778


>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
          Length = 141

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 457 PPILDQTSASQRTSNRRPVAYRPKLEDLFHALG 359
           P    QTS     SN  P   R  +E+LF A+G
Sbjct: 8   PSTTPQTSTRVTISNLHPAVSRQDIEELFGAIG 40


>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 457 PPILDQTSASQRTSNRRPVAYRPKLEDLFHALG 359
           P    QTS     SN  P   R  +E+LF A+G
Sbjct: 213 PSTTPQTSTRVTISNLHPAVSRQDIEELFGAIG 245


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 43   HINQILRLDEEASEAEITVERSADIVLRDLKRLYENSIKPL-EGLYKYRDLSNR 201
            HI  +L  + E  E++I  +      LRD +  YEN I+ L + +   R+ SN+
Sbjct: 1154 HIKLVLESNAEGYESQIKEKDLVIQQLRDEREQYENQIESLRQQIVVIREESNK 1207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,612
Number of Sequences: 59808
Number of extensions: 312640
Number of successful extensions: 773
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)