Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30263
         (308 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P54611 Cluster: Vacuolar ATP synthase subunit E; n=36; ...    50   1e-05
UniRef50_Q4SKG3 Cluster: Chromosome 13 SCAF14566, whole genome s...    39   0.019
UniRef50_P36543 Cluster: Vacuolar ATP synthase subunit E 1; n=35...    38   0.033
UniRef50_UPI000155BDF6 Cluster: PREDICTED: similar to vacuolar p...    33   0.94 
UniRef50_UPI0000E1F395 Cluster: PREDICTED: ATPase, H+ transporti...    33   0.94 
UniRef50_UPI0000383D19 Cluster: hypothetical protein Magn0300758...    31   5.0  
UniRef50_Q081E2 Cluster: Oxidoreductase domain protein precursor...    31   5.0  
UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38; Euka...    31   5.0  
UniRef50_UPI00005A53AD Cluster: PREDICTED: similar to ATPase, H+...    31   6.6  
UniRef50_Q6CP40 Cluster: Kluyveromyces lactis strain NRRL Y-1140...    31   6.6  

>UniRef50_P54611 Cluster: Vacuolar ATP synthase subunit E; n=36;
           Eumetazoa|Rep: Vacuolar ATP synthase subunit E -
           Drosophila melanogaster (Fruit fly)
          Length = 226

 Score = 50.0 bits (114), Expect = 1e-05
 Identities = 25/31 (80%), Positives = 27/31 (87%)
 Frame = +3

Query: 171 SSNMLNQARLKVLKVXEDXVRNVLDEAGKRL 263
           SSNMLNQARLKVLKV ED V +VLD+A KRL
Sbjct: 72  SSNMLNQARLKVLKVREDHVSSVLDDARKRL 102



 Score = 35.9 bits (79), Expect = 0.18
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 74  IEKGRLVQQQRXKIMEYL*KE 136
           IEKGRLVQQQR KIMEY  K+
Sbjct: 40  IEKGRLVQQQRLKIMEYYEKK 60


>UniRef50_Q4SKG3 Cluster: Chromosome 13 SCAF14566, whole genome
           shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 13
           SCAF14566, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 288

 Score = 39.1 bits (87), Expect = 0.019
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +3

Query: 174 SNMLNQARLKVLKVXEDXVRNVLDEAGKRL 263
           SN+ NQARLKVLKV  D + ++L+EA +RL
Sbjct: 94  SNLKNQARLKVLKVRNDMITDLLNEARRRL 123



 Score = 32.3 bits (70), Expect = 2.2
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 74  IEKGRLVQQQRXKIMEYL*KE 136
           IEKGRLVQ QR KIM+Y  K+
Sbjct: 61  IEKGRLVQTQRLKIMDYYEKK 81


>UniRef50_P36543 Cluster: Vacuolar ATP synthase subunit E 1; n=35;
           Euteleostomi|Rep: Vacuolar ATP synthase subunit E 1 -
           Homo sapiens (Human)
          Length = 226

 Score = 38.3 bits (85), Expect = 0.033
 Identities = 16/30 (53%), Positives = 25/30 (83%)
 Frame = +3

Query: 174 SNMLNQARLKVLKVXEDXVRNVLDEAGKRL 263
           SN++NQARLKVL+  +D + ++L+EA +RL
Sbjct: 73  SNLMNQARLKVLRARDDLITDLLNEAKQRL 102



 Score = 33.5 bits (73), Expect = 0.94
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 74  IEKGRLVQQQRXKIMEYL*KE 136
           IEKGRLVQ QR KIMEY  K+
Sbjct: 40  IEKGRLVQTQRLKIMEYYEKK 60


>UniRef50_UPI000155BDF6 Cluster: PREDICTED: similar to vacuolar
           proton-ATPase E-subunit; n=2; Mammalia|Rep: PREDICTED:
           similar to vacuolar proton-ATPase E-subunit -
           Ornithorhynchus anatinus
          Length = 282

 Score = 33.5 bits (73), Expect = 0.94
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 74  IEKGRLVQQQRXKIMEYL*KE 136
           IEKGRLVQ QR KIMEY  K+
Sbjct: 252 IEKGRLVQTQRLKIMEYYEKK 272


>UniRef50_UPI0000E1F395 Cluster: PREDICTED: ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E2 isoform 1; n=4;
           Theria|Rep: PREDICTED: ATPase, H+ transporting,
           lysosomal 31kDa, V1 subunit E2 isoform 1 - Pan
           troglodytes
          Length = 196

 Score = 33.5 bits (73), Expect = 0.94
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 74  IEKGRLVQQQRXKIMEYL*KE 136
           IEKGRLVQ QR KIMEY  K+
Sbjct: 40  IEKGRLVQTQRLKIMEYYEKK 60


>UniRef50_UPI0000383D19 Cluster: hypothetical protein Magn03007587;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           hypothetical protein Magn03007587 - Magnetospirillum
           magnetotacticum MS-1
          Length = 163

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 285 GVLWHFKPGACQLRQVHYVRXLXELS---VPSXELGSACXKIGSSSEVQP 145
           G L  FKPGA   RQV  +R   ELS   +P+   G    K+      QP
Sbjct: 29  GPLTEFKPGAHTARQVLILRLAKELSAAGIPAATFGDMATKVIDQLSTQP 78


>UniRef50_Q081E2 Cluster: Oxidoreductase domain protein precursor;
           n=10; Gammaproteobacteria|Rep: Oxidoreductase domain
           protein precursor - Shewanella frigidimarina (strain
           NCIMB 400)
          Length = 345

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHRKGXSCPAATXEDYGI 123
           IE  G+R    N CE    V +  G  C   T EDYG+
Sbjct: 199 IEATGRRGQDGNICESTAIVSYSNGVQCHLHTAEDYGL 236


>UniRef50_P42794 Cluster: 60S ribosomal protein L11-2; n=38;
           Eukaryota|Rep: 60S ribosomal protein L11-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 182

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHR 155


>UniRef50_UPI00005A53AD Cluster: PREDICTED: similar to ATPase, H+
           transporting, V1 subunit E isoform 1; n=1; Canis lupus
           familiaris|Rep: PREDICTED: similar to ATPase, H+
           transporting, V1 subunit E isoform 1 - Canis familiaris
          Length = 140

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 5/35 (14%)
 Frame = +3

Query: 174 SNMLNQARLK-----VLKVXEDXVRNVLDEAGKRL 263
           SN++NQARLK     VL+  +D + ++L+EA +RL
Sbjct: 20  SNLMNQARLKSNRCQVLRAIDDLITDLLNEAKQRL 54


>UniRef50_Q6CP40 Cluster: Kluyveromyces lactis strain NRRL Y-1140
           chromosome E of strain NRRL Y- 1140 of Kluyveromyces
           lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
           lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-
           1140 of Kluyveromyces lactis - Kluyveromyces lactis
           (Yeast) (Candida sphaerica)
          Length = 469

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 228 RXLXELSVPSXELGSACXKIGSSSEVQPASPSFH 127
           R L EL+ P   LGSA      SS+V+P+   FH
Sbjct: 244 RYLTELNQPMINLGSAQILTADSSQVEPSKDFFH 277


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,510,136
Number of Sequences: 1657284
Number of extensions: 2146618
Number of successful extensions: 5599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5598
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)