Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30263
         (308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   3.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    24   4.5  

>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 210 SVPSXELGSACXKIGSSSEVQPASPSFHKYSI 115
           ++P   LG  C K+  +    PA+ S   Y I
Sbjct: 528 TLPILALGLVCNKVWQTKRFNPANTSITNYEI 559


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 269 SNQALASFVKYITYVIFXNFQY 204
           SNQ L  F KY+  ++F +F +
Sbjct: 678 SNQELVDFDKYLVELLFLSFAF 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 810,598
Number of Sequences: 5004
Number of extensions: 8722
Number of successful extensions: 24
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)