Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30263
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 32 0.11
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 32 0.11
02_02_0196 + 7685933-7685961,7686086-7686284 32 0.11
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 32 0.11
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 29 0.74
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367... 29 0.98
01_05_0369 - 21468204-21468595,21471417-21471606,21471680-214718... 28 1.3
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 27 2.3
01_05_0807 + 25409598-25410074 27 4.0
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893... 26 5.2
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 26 6.9
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 26 6.9
03_05_0173 + 21502765-21504216 25 9.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 10 IEQXGQRKGRRNRCEGRGGVQHR 78
+E+ G R RR RC+ R G+QHR
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHR 155
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 10 IEQXGQRKGRRNRCEGRGGVQHR 78
+E+ G R RR RC+ R G+QHR
Sbjct: 132 LERAGYRVARRRRCKSRVGIQHR 154
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 10 IEQXGQRKGRRNRCEGRGGVQHR 78
+E+ G R RR RC+ R G+QHR
Sbjct: 26 LERAGYRVARRRRCKSRVGIQHR 48
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 10 IEQXGQRKGRRNRCEGRGGVQHR 78
+E+ G R RR RC+ R G+QHR
Sbjct: 133 LERAGYRVARRRRCKSRVGIQHR 155
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 174 SNMLNQARLKVLKVXEDXVRNVLDEAGKRLV 266
S LN AR+KVL+ + V + ++AGK L+
Sbjct: 71 STQLNAARIKVLRAQDGVVGEMKEDAGKSLL 101
>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
3675973-3676042,3676157-3676224
Length = 1337
Score = 28.7 bits (61), Expect = 0.98
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 144 ASPSFHKYSIIFXRCC 97
+SPS+H Y ++F CC
Sbjct: 1193 SSPSYHMYRVVFENCC 1208
>01_05_0369 -
21468204-21468595,21471417-21471606,21471680-21471867,
21484028-21484580
Length = 440
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 13 EQXGQRKGRRNRCEGRGGVQHRKGXSCPAATXEDYG 120
++ G+RKGR R G + R+G PA T E G
Sbjct: 318 DRPGRRKGRPKGRRRRRGWRDRRGDGVPAKTEEQPG 353
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 80 FRC*TPPRPSHRFLRPFRWPXC 15
FRC P P ++ PF+WP C
Sbjct: 919 FRCLIPAPPKYK--NPFKWPQC 938
>01_05_0807 + 25409598-25410074
Length = 158
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 22 GQRKGRRNRCEGRGGVQHRKG 84
G+R RR GRGGV R+G
Sbjct: 59 GRRNARRGEGAGRGGVGERRG 79
>05_06_0131 -
25888434-25888931,25889105-25889155,25889249-25889331,
25889733-25889826,25890188-25890310,25890909-25891154
Length = 364
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 243 QVHYVRXLXELSVPSXELGSACXKIGSSSEVQP 145
Q H + E S P L S+C +I SS+ P
Sbjct: 219 QTHSAKSCEESSEPFSRLASSCHQIQSSNRTHP 251
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 210 SVPSXELGSACXKIGSSSEVQP--ASPSFH 127
S+PS + + G+SSE +P SP+FH
Sbjct: 880 SIPSAPVAQSWISFGASSESKPTIVSPTFH 909
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = +1
Query: 22 GQRKGRRNRCEG--RGG 66
G+R+GRR RC G RGG
Sbjct: 2 GKRRGRRRRCSGKRRGG 18
>03_05_0173 + 21502765-21504216
Length = 483
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 13 EQXGQRKGRRNRCEGRG 63
+Q GQRKG NR GRG
Sbjct: 359 QQQGQRKGGANRRGGRG 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,589,563
Number of Sequences: 37544
Number of extensions: 64523
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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