Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30263
         (308 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   26   5.4  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        26   7.2  

>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 195 ELGSACXKIGSSSEVQPASPSFHKYSIIFXRC 100
           E+   C  + S +  + A P FHKY  I  +C
Sbjct: 380 EMQQNCSLVASIATFRDACPGFHKYLNIQYKC 411


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 162 SSEVQPASPSFHKYSIIFXRCC 97
           S + +P++P FH++S+    CC
Sbjct: 222 SLQDRPSTPDFHRFSLNAVSCC 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,079,820
Number of Sequences: 59808
Number of extensions: 68831
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)