Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30263
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)            32   0.090
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)            31   0.16 
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)            31   0.16 
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)            31   0.16 
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo...    31   0.16 
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP...    28   1.1  
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    28   1.5  
At1g10110.1 68414.m01140 F-box family protein contains Pfam PF00...    27   3.4  
At3g24240.1 68416.m03042 leucine-rich repeat transmembrane prote...    25   7.8  

>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
          Length = 172

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 123 LERPGYRVARRRRCKARVGIQHR 145


>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 
          Length = 182

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHR 155


>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 
          Length = 172

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 123 LERPGYRVARRRRCKTRVGIQHR 145


>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
          Length = 182

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHR 155


>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
           ribosomal protein L11, cytosolic, Arabidopsis thaliana,
           PIR:S49033
          Length = 182

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  IEQXGQRKGRRNRCEGRGGVQHR 78
           +E+ G R  RR RC+ R G+QHR
Sbjct: 133 LERPGYRVARRRRCKTRVGIQHR 155


>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
           E subunit / vacuolar proton pump E subunit (VATE)
           identical to SP|Q39258 Vacuolar ATP synthase subunit E
           (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
           E subunit) {Arabidopsis thaliana}
          Length = 230

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 174 SNMLNQARLKVLKVXEDXVRNVLDEAGKRLV 266
           S  LN +R+KVL+  +D V  + D+A K L+
Sbjct: 71  SMQLNASRIKVLQAQDDIVNAMKDQAAKDLL 101


>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -3

Query: 246 RQVHYVRXLXELSVPSX--ELGSACXKIGSSSEVQPASPSFHKYSIIFXRCCWTR 88
           R+V  V+ L  ++VP+   +  S+  +   S+EV+      HK  + F  CCW +
Sbjct: 807 REVIAVKKLWPVTVPNLNEKTKSSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNK 861


>At1g10110.1 68414.m01140 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein family,
           AtFBX7 (GI:20197899) [Arabidopsis thaliana]
          Length = 332

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 214 FXKXTYVMYLTKLASAWFEVPKDT 285
           F    Y+ Y +K    WFE+P  T
Sbjct: 112 FVPSPYIYYCSKRGQEWFEIPAST 135


>At3g24240.1 68416.m03042 leucine-rich repeat transmembrane protein
           kinase, putative similar to CLV1 receptor kinase
           GB:AAB58929 from [Arabidopsis thaliana]
          Length = 1141

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 162 SSEVQPASPSFHKYSIIFXRCCWTR 88
           S+EV+      HK  + F  CCW R
Sbjct: 837 SAEVKTLGTIRHKNIVRFLGCCWNR 861


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,337,074
Number of Sequences: 28952
Number of extensions: 48417
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)