Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30261
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 148 3e-37
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 51 5e-08
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 49 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 45 3e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 7e-06
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 9e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 41 5e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 41 5e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 6e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 2e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 38 3e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.001
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.002
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.006
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.007
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.017
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.017
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 32 0.023
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.12
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 30 0.12
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.16
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.16
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.21
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 0.49
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 0.49
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 0.85
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 0.85
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 0.85
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 1.1
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 1.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 3.4
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 4.5
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 25 4.5
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 4.5
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 24 6.0
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 24 6.0
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 7.9
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 24 7.9
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 24 7.9
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 7.9
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 148 bits (358), Expect = 3e-37
Identities = 67/114 (58%), Positives = 93/114 (81%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
RGFGFV + + + A++A ELN KE +GK LYVGRAQKK ER++EL++++EQ+K E++
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQKKHEREEELRKRYEQMKLEKMN 359
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
+YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M E G+ KGFGFVC+++
Sbjct: 360 KYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTT 413
Score = 66.9 bits (156), Expect = 9e-13
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
GN++G+GFV F+ ++A A +NG L+ K +YVG + ERQ K E LK+
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHVSRRERQS----KVEALKAN 259
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
N+Y+KNLD I ++ F FG ITS ++ ++ + +GFGFV +++
Sbjct: 260 F------TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Score = 54.0 bits (124), Expect = 6e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+GFGFV + P+ A +A E+N + ++ GKPLYV AQ+K R+ +L+ + +
Sbjct: 401 GKSKGFGFVCYTTPEEANKAVTEMN-QRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQF 459
Query: 183 RL 188
RL
Sbjct: 460 RL 461
Score = 53.2 bits (122), Expect = 1e-08
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S G+ +V F + + E+A ELN L++G+P + +Q+ +K
Sbjct: 120 SLGYAYVNFHNMEDGEKALDELN-YTLIKGRPCRIMWSQRDPSLRK-------------- 164
Query: 189 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCFSS 350
G N+++KNLD ID++ L F+ FG I S KV +++ G KG+GFV F S
Sbjct: 165 ---MGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDS 217
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 51.2 bits (117), Expect = 5e-08
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+G+V FE P+AA +A + NG + ++G+ + + + + + ++ +
Sbjct: 301 GRSKGYGYVDFETPEAA-KAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGD 359
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
+L+ ++V NL ++ L F G I S ++ + GR KGFG+V FS
Sbjct: 360 QLSE-PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Score = 44.0 bits (99), Expect = 7e-06
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Frame = +3
Query: 120 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 275
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 276 GTITSAKVML--EDGRXKGFGFVCFSS 350
GTI A+V++ + GR KG+G+V F +
Sbjct: 287 GTIVGARVIMDGQSGRSKGYGYVDFET 313
Score = 36.3 bits (80), Expect = 0.001
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 104
G +GFG+V F D D+A++ C+E+NG + G+P
Sbjct: 404 GRLKGFGYVTFSDIDSAKK-CVEMNG-HFIAGRP 435
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 48.8 bits (111), Expect = 2e-07
Identities = 38/114 (33%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 194
GFGF F E AC LN +L GKP+ V RA + +
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLF-GKPIRVNRASQ----------------DRGVNT 95
Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
G NL+V NLD +D+ L F+ G + A + E+GR KG+GFV + S
Sbjct: 96 LIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
Score = 32.3 bits (70), Expect = 0.023
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK---KAERQKELKRK 161
G S+G+GFV+++ + A+ A IE + + KP+ V A K K ER ++ +
Sbjct: 137 GRSKGYGFVSYDSFETAD-AAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAER 191
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 45.2 bits (102), Expect = 3e-06
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERA--CIE--LNGKE-LVEGKPLYVGRAQKKAERQKELKRKFEQL 173
++GF +V F DA + A C E LNG+ L++ + GR K A K +
Sbjct: 164 NKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLS----KTASI 219
Query: 174 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRXKGFGFVCF 344
+S + + L+V NLD D L++ F G I ++M ED G+ KGFGFV F
Sbjct: 220 QSSK--KEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERA 62
G +GFGFV F D D +A
Sbjct: 266 GKCKGFGFVDFPDIDTCMKA 285
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.0 bits (99), Expect = 7e-06
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RG+GFV F + A+RA EL K+L G+ L + A + ++ E+ + +
Sbjct: 43 GENRGYGFVTFSMLEDAQRAAKELKNKKL-HGRILRLDFATPR--KRSEVDTDQNKAVKK 99
Query: 183 RLTRYQGVNLYVKNLDDTI-DDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFV 338
+ + L ++NL +I + L F+ FG + K+ + GR GF FV
Sbjct: 100 TIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFV 153
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G GF FV +D AAE A LNG E ++G+P+ V A K
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTE-IDGRPIAVDWAVSK 186
Score = 27.1 bits (57), Expect = 0.85
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRXKGFGFVCFSS 350
+G+ + ++ +D K G + AKV E GR KGFGF+ F S
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFIS 548
Score = 27.1 bits (57), Expect = 0.85
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 101
G S+GFGF+ F A A LNG+E+ K
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKK 568
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 43.6 bits (98), Expect = 9e-06
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = +3
Query: 207 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCF 344
NLYVKNLDDT+ +L F+PFG+I S+ + G KG+GFV F
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 43.2 bits (97), Expect = 1e-05
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKS 179
G S+G+GFVAF +AA RA LNG +V K ++V A++K++R + L+ F + S
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTS 480
Query: 180 ERLTRYQGVNLYVK 221
E+ + L+VK
Sbjct: 481 EQTAQQDNKALFVK 494
Score = 28.7 bits (61), Expect = 0.28
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITS 290
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 41.1 bits (92), Expect = 5e-05
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Frame = +3
Query: 51 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 221
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 222 NLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
N+D ++ E L+ FA G++ ++ + G KGF ++ FS
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 41.1 bits (92), Expect = 5e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 170
S+G+GFV+F P A +A LNG L K L+V A+K+ +R+K L F Q
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 37.1 bits (82), Expect = 8e-04
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +3
Query: 207 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--XKGFGFVCFS 347
NL+VKNLDD I + ++L + F+ FG I S + KG+GFV FS
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Score = 29.5 bits (63), Expect = 0.16
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 174 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 287
K++R T+ +++YV NL T L + F PFG +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
Score = 28.3 bits (60), Expect = 0.37
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KSER 185
F F+ FE+ +A+ A LNG +G L V + +L+ +Q+ +
Sbjct: 68 FAFITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
Query: 186 LTRYQGVNLYVKNLDDTIDDERL 254
R+ + Y K T+ + R+
Sbjct: 127 KIRFSKIEKYTKETRPTVSEVRV 149
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 6e-05
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRGFGF+ F++P ++ + ++GK + RA + E++K K
Sbjct: 201 GRSRGFGFLTFKNPKCVNEV---MSKEHHLDGKIIDPKRAIPREEQEKTAK--------- 248
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
++V + +E R F FG + A +M++ GR +GFGFV + +
Sbjct: 249 ---------MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 33.1 bits (72), Expect = 0.013
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
+++ L+ D+ LR F FG + VM + GR +GFGF+ F +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKN 213
Score = 32.7 bits (71), Expect = 0.017
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G RGFGFV +E+ A E + + GKP+ V RA KA + R
Sbjct: 285 GRPRGFGFVTYENESAVEATMSQ--PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGN 342
Query: 183 RLTRY-QGVNLY 215
Y Q +N+Y
Sbjct: 343 ANPYYAQNMNMY 354
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 2e-04
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
L+V NL + ++DE L + F+ + ++ KV+ + +G+ +GFGFV F
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSF 77
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 122
G +RGFGFV+F+D D +A E NGK + +P+ + RA
Sbjct: 67 GKTRGFGFVSFKDSDQFLKAWREKNGK-YIGSRPVKLSRA 105
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.3 bits (85), Expect = 3e-04
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
Y+G LYV N+D ++++ + F +G + S ++ + KGFG+V ++
Sbjct: 754 YEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTT 805
Score = 30.7 bits (66), Expect = 0.069
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKEL-------VEGKPLY-VGRAQKKAERQKELKRKFE 167
+GFG+V AE A + GK+L V KP + + + + + L + FE
Sbjct: 796 KGFGYVVMTTNQDAENA-LSAAGKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFE 854
Query: 168 QLKSERLT-------RYQGVNLYVKNLDDTIDDERLRKEFAPFGTI 284
+S +++ + + +L V N+D T+++ RLR F +G +
Sbjct: 855 TTESNKMSTPKKSFEQIKSKSLGVTNVDGTVNEARLRSLFESYGKL 900
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCF 344
N+Y++ L DE L FG ++S+K ++ E KG+GF CF
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.5 bits (78), Expect = 0.002
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S GFGFV F+D +A A +NG +++G L + + + + E+++ +
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNG-FVLDGHKLEIKLSHQGVDAAAEVRK-------QDS 715
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
++ +G + +KNL + ++ +G + S +V + D +GF F F
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEF 768
Score = 32.3 bits (70), Expect = 0.023
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 134
N +GF ++ F D D A RA +EL+ K +G+ L+V A+ ++
Sbjct: 362 NPKGFAYIDFHDADDAVRAYLELDAKPF-QGRLLHVLPAKARS 403
Score = 27.5 bits (58), Expect = 0.64
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Frame = +3
Query: 165 EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXK------- 323
E++ +E + +YVKNL+ + E +K F P SA + + +
Sbjct: 606 EKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSM 665
Query: 324 GFGFVCF 344
GFGFV F
Sbjct: 666 GFGFVEF 672
Score = 27.1 bits (57), Expect = 0.85
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
L+++NL + ++ L+ F PFG + + ++ KGF ++ F
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.3 bits (75), Expect = 0.006
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 167
RGFGFV+F + + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 33.9 bits (74), Expect = 0.007
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
N+Y+ N DD++ ERL+++F FG I R K FV F+S
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTS 458
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.7 bits (71), Expect = 0.017
Identities = 34/112 (30%), Positives = 49/112 (43%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 194
GFGFV ED A + GKE + G + V A+ + R++E R+ K R R
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFM-GSRIVVEPARGE-RRRRENFRESAASKYPR-PR 94
Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
G L V+NL + + + L+ G T E+ G G V FS+
Sbjct: 95 RTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHREN---PGAGVVEFST 143
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.017
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 137
SRG+GFV F D + + A E+ G ++ +P+ VG A K++
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQG-QICGDRPIRVGLATPKSK 268
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 32.3 bits (70), Expect = 0.023
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE 149
SRGFG+V FE D A + L+G++L+ G+P+ + A+ + +E
Sbjct: 132 SRGFGYVEFETADTLS-AALALSGEDLM-GRPVRITVAEPRRSFARE 176
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.9 bits (64), Expect = 0.12
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 170
S+GFG++ + +P +A A ++NG +L + +G + E + ++F++
Sbjct: 379 SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.12
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 128
SRGFGF++F + A A LN +E G+ L V +A++
Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQEFY-GRVLNVQKAKR 179
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.5 bits (63), Expect = 0.16
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 101
G+S+GF F F++P AE A L+GK+ K
Sbjct: 348 GSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNK 380
Score = 29.1 bits (62), Expect = 0.21
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCFSS 350
+Y+ NL + ++++ + PFG + S +++ + DG KGF F F +
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.16
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 122
G S+GFG V FE+ + A + +LNG G+PL + A
Sbjct: 317 GRSKGFGVVQFENENDAASSIEKLNGYR-YGGRPLQLSYA 355
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 29.1 bits (62), Expect = 0.21
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEG 98
SR F FV +ED AE A E++G+ L G
Sbjct: 46 SRPFAFVEYEDSRDAEDAYYEVHGRRLERG 75
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 0.49
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 135 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 242
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 0.49
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 147 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 311
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 312 GR 317
GR
Sbjct: 244 GR 245
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 0.85
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQ 170
S G F FE+ D A+ EL+GK++++ V + +K E +R+F++
Sbjct: 90 SLGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKE 149
Query: 171 LKSER--LTRYQGVNLYVKNLDDTIDDERLRKEFAP 272
+ R LT Y G + ++ + + RK P
Sbjct: 150 REHLRSWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.1 bits (57), Expect = 0.85
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVE 95
+RG FV +E+ A RAC +L+G ++
Sbjct: 49 TRGTAFVVYENVQDARRACEKLSGYNFMD 77
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.1 bits (57), Expect = 0.85
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFV 338
+Y+ NLD ++++ + F+ FG ++ E G+ KGF F+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 1.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 66 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 239
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 240 DDER 251
D+ R
Sbjct: 393 DECR 396
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 1.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 159 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 287
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELN 77
G +G+GF + DP A A LN
Sbjct: 43 GQPKGYGFCEYHDPATAASAVRNLN 67
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 4.5
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 54 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 233
E+A +G + G PL K ER K+ K+K + S V+ V + D
Sbjct: 107 EKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKKKKTSLSNATHPAPAVSAVVASADA 165
Query: 234 TIDDER 251
+ DD R
Sbjct: 166 SFDDSR 171
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNL 212
+K E+Q EL R+ L+ R + G+N+
Sbjct: 180 RKDREKQLELTRRLSHLQKRRELKAAGINI 209
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 4.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 302
+YV L +I+ L F+ FG++++ +++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEII 37
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 39 DPDAAERACIELNGKELVEGK 101
DPDA E + +E+N ++++E K
Sbjct: 376 DPDAFESSWLEVNPEDIMEPK 396
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 24.2 bits (50), Expect = 6.0
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = +3
Query: 18 FGFVAFEDP-DAAERACIELNGKELVEGKPLYVG---RAQKKAERQKELKRKFEQLKSER 185
+GF F D +AER +EL E + +P Y+ + KK +R L R+ LK
Sbjct: 67 YGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKRDLLLARERALLKKNE 126
Query: 186 L 188
L
Sbjct: 127 L 127
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 69 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 185
EL K + K L G+ +KK E +K K+K Q KS +
Sbjct: 211 ELQNKGKEKQKELKKGKREKKDEEEKPKKKK--QKKSSK 247
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 100 LPSTSSLPFNSMQALSAASGSSKAT 26
+PSTSS ++ +LS++S SS A+
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTAS 264
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 87 LVEGKPLYVGRAQKKAERQKELKRKFEQ 170
LV LY+ + +++E +KELK F Q
Sbjct: 238 LVRTYHLYLDESPEESEPEKELKATFNQ 265
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 23.8 bits (49), Expect = 7.9
Identities = 7/16 (43%), Positives = 15/16 (93%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQ 170
Q+K +R++EL++K+E+
Sbjct: 47 QRKLQRERELRQKYEE 62
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 84 ELVEGKPLYVGR 119
E++EGKPL+ GR
Sbjct: 206 EMIEGKPLFPGR 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,654
Number of Sequences: 5004
Number of extensions: 19127
Number of successful extensions: 150
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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