Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30261
(350 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 156 4e-39
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 1e-07
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 49 1e-06
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 46 9e-06
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 45 2e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 43 6e-05
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 8e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 42 1e-04
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 40 6e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.002
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.005
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 36 0.007
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 36 0.012
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 34 0.028
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 34 0.028
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.037
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 33 0.049
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 33 0.049
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 33 0.065
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 32 0.11
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.20
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 31 0.20
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.20
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 31 0.35
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.35
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 27 0.37
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 30 0.46
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 30 0.46
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 0.46
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 30 0.61
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 29 0.80
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 29 1.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 29 1.1
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7) 29 1.4
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 29 1.4
SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74) 29 1.4
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.9
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 28 2.4
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 28 2.4
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 27 4.3
SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7) 27 4.3
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 27 4.3
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 4.3
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.3
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 27 5.7
SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2) 27 5.7
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 27 5.7
SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6) 27 5.7
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39) 26 7.5
SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83) 26 9.9
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11) 26 9.9
SB_48691| Best HMM Match : RTC_insert (HMM E-Value=4e-06) 26 9.9
SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23) 26 9.9
SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38) 26 9.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23) 26 9.9
SB_10916| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.9
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 156 bits (379), Expect = 4e-39
Identities = 74/117 (63%), Positives = 94/117 (80%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+GFGFV+FE P+ AE A LNGKE + G+ L+ GRA+K+AER E+K + E+ + E
Sbjct: 146 GKSKGFGFVSFETPEEAEEAVNVLNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQE 204
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCFSS 350
R+ R+QGVNLY+KNLDD IDDERLR+EF+P+GTI+SAKVM +D G KGFGFVCFSS
Sbjct: 205 RINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSS 261
Score = 64.5 bits (150), Expect = 2e-11
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +3
Query: 9 SRGFGFVAFEDP--DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
S G+ +V F+ P DAA A ++G L+ K ++VGR K ER +++ + ++
Sbjct: 53 SLGYAYVNFQQPGHDAALEAIARVDGM-LLNDKKVFVGRWMSKKERIEKMGTQPKKF--- 108
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
N+YVKN D +DDE++++ A G I S KVM + +G+ KGFGFV F +
Sbjct: 109 -------TNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFET 158
Score = 58.0 bits (134), Expect = 2e-09
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL 152
GNS+GFGFV F P+ A +A E+NG+ L+ KPLYV AQ++ ER+ +L
Sbjct: 249 GNSKGFGFVCFSSPEEATKAVTEMNGRILI-SKPLYVALAQRREERKAQL 297
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 52.4 bits (120), Expect = 1e-07
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S G+ FV +++PD A +A E+NG L + K LK F + S
Sbjct: 65 GQSLGYAFVNYDNPDDANKAVREMNGARL----------------QNKTLKVSFARPSS- 107
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
T + NLY+ L + +E + F PFG I ++KV+ + G +G GFV F
Sbjct: 108 --TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRF 160
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL 89
G RG GFV F+ A+ A +LN K L
Sbjct: 150 GEGRGTGFVRFDKRCEAQTAIDDLNNKTL 178
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 48.8 bits (111), Expect = 1e-06
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S+G ++ F D A A I L+G++L+ G P+ V Q + R L + E+LK
Sbjct: 186 SKGIAYIEFTDKSAVPLA-IGLSGQKLL-GAPIMVMLTQAEKNR---LAAEAERLKQP-- 238
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCF 344
LYV +L I + ++ F PFGT+ S +++ E R KG+GFV F
Sbjct: 239 --LGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 137
S+G+GFV F + +AA+RA ++NG EL G+PL +G ++ +
Sbjct: 282 SKGYGFVQFREAEAAKRAMEQMNGFELA-GRPLKIGPVTERGD 323
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 46.0 bits (104), Expect = 9e-06
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
+GF FV ++ P+AA+ A ++NG L+ G+ + VGR + L +FEQ ++++
Sbjct: 143 KGFAFVEYDLPEAAQLALEQMNG-VLLGGRNIKVGR-PSNVPQAAPLIEQFEQ-EAKKYA 199
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFV 338
R +Y+ ++ + ++ ++ F FG + + E G+ KG+GF+
Sbjct: 200 R-----IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFI 245
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFV 338
+YV +++ + +E +R F PFG I + + + + KGF FV
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFV 148
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 44.8 bits (101), Expect = 2e-05
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
+G+GFV F + A+ A I++ V GKP+ R K + K L
Sbjct: 54 QGYGFVEFLGEEDADYA-IKVMNMIKVYGKPI---RVNKASAHNKNLD------------ 97
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRXKGFGFVCFSS 350
G NL++ NLD +D++ L F+ FG I ++ D G KGF F+ F+S
Sbjct: 98 --VGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFAS 151
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
GNS+GF F+ F DA++ A +NG+ L +P+ V A KK +
Sbjct: 139 GNSKGFAFINFASFDASDAAIEAMNGQYLC-NRPITVSYAFKKESK 183
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 43.2 bits (97), Expect = 6e-05
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 81 KELVEGKPLYVGR-AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR 257
+ L K +Y +Q+K + R F L S+ + +++ L+ +E L+
Sbjct: 8 RRLTSSKIIYPESCSQRKPFQCFSASRPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLK 67
Query: 258 KEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
F+ +GTI +M DGR +GFGFV + S
Sbjct: 68 DYFSQWGTIVDCVIMKRDGRSRGFGFVTYES 98
Score = 27.1 bits (57), Expect = 4.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDA 50
G SRGFGFV +E D+
Sbjct: 86 GRSRGFGFVTYESSDS 101
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.7 bits (96), Expect = 8e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G RGFGFV F D ++A + +G++L +G+P+ V +AQ + ER
Sbjct: 47 GRPRGFGFVTFGSEDEMDKAIDKFDGEDL-DGRPMKVNKAQPRGER 91
Score = 31.1 bits (67), Expect = 0.26
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
RGF FV F E A EL+G+E +G+ + V +A+ + +R
Sbjct: 270 RGFAFVTFGSKKNMEDAINELDGQEF-DGRSMKVNQARSREQR 311
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +3
Query: 282 ITSAKVML--EDGRXKGFGFVCFSS 350
+ S KV+ E GR +GFGFV F S
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGS 59
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G RGFGFV F + E+A E +G++ +G+P+ V +AQ + ER
Sbjct: 42 GRPRGFGFVTFGSKEEMEKAIDEFDGQDF-DGRPMKVNQAQPRGER 86
Score = 33.9 bits (74), Expect = 0.037
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
Y+ NL ++D++ L ++F + KV+ E GR +GFGFV F S
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGS 54
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 39.9 bits (89), Expect = 6e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
G NL++ +L D L + F PFGT+ SAKV + + K FGFV + +
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 327
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 39.9 bits (89), Expect = 6e-04
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S GFGFV + + A++A +LNG +G K LK F + +
Sbjct: 85 GWSYGFGFVDYNTTEDAQKAIDKLNG--------FTIGN--------KVLKVAFSRPGGD 128
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
+G NLYV N+ + + RK F +G I + +++ + G KG GFV +
Sbjct: 129 NT---KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLY 181
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 6e-04
Identities = 28/110 (25%), Positives = 53/110 (48%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S+GFGFV+F + A +A E++ + GK + A +K + ++ + +
Sbjct: 553 SKGFGFVSFVRREDAAKAIAEMD-SVTIGGKQVKTNWAARKNNPTQTKPLVWDDVFHQ-- 609
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFV 338
+ +YV NL + D L++ F+ +G+I KV + KG+ F+
Sbjct: 610 SSQLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD----KGYAFI 655
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITS 290
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 39.5 bits (88), Expect = 8e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
SRGFGFV F +P+ A+ A LNGKE V+G+ L +
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKE-VQGRTLKI 131
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 137
G RGFGFV F + E+A E +G++L +G+P+ V A+ + +
Sbjct: 134 GRPRGFGFVTFGSKEEMEKAIDEFDGQDL-DGRPMKVNEAKPRGD 177
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.7 bits (81), Expect = 0.005
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVC 341
G NL++ +L D L + F PFGT+ SAKV + + K FG C
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
Score = 32.7 bits (71), Expect = 0.086
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 249 RLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
RL + F PFGT+ SAKV + + K FGFV + +
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDN 312
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 36.3 bits (80), Expect = 0.007
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +3
Query: 36 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLY 215
E P E + NGK K + ++ + +K K E ++++
Sbjct: 131 EAPKKKEAPVAKQNGKSKKAKKEESSSESDSDSDEETPTPKKTVPAKEE-------MSVF 183
Query: 216 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
+ NL D+E L F G + +V+ ++GR +GFG+ F+S
Sbjct: 184 LGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTS 228
Score = 35.9 bits (79), Expect = 0.009
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 137
G SRGFGFV ++D + A++ E+ G E V+G+ + + A + E
Sbjct: 324 GESRGFGFVDYDDVETAKKVLSEMAGAE-VDGRQVRLDFASPRTE 367
Score = 30.3 bits (65), Expect = 0.46
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G SRGFG+ F + +A +ELNG++ G+ + + A K R
Sbjct: 216 GRSRGFGYADFTSKEDYNKA-LELNGEDCC-GREIRINPANSKPSR 259
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 36.3 bits (80), Expect = 0.007
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
+G+GFV FE P +A++A L K + Q ++ ++ EQ
Sbjct: 141 KGYGFVDFESPISAQKAVAALVNKGI-----------------QAQMAKQQEQ------- 176
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
NLY++NL D+ L F+ +G + S +++ + D KG GF S
Sbjct: 177 --DPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMES 228
Score = 34.3 bits (75), Expect = 0.028
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
NLY++ L D+ L + +GTI S K +L + KG+GFV F S
Sbjct: 101 NLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFES 150
Score = 27.1 bits (57), Expect = 4.3
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQ-KKAERQKELKRKFEQLK 176
NS+G GF E + E+ + N K+++ G + L V A +RQ + KR +Q++
Sbjct: 217 NSKGVGFARMESAEKCEQVIKDFN-KKMLPGCIQELVVKFADGGPKKRQGQAKRYTKQME 275
Query: 177 SERLTRYQGVNL 212
+ Y NL
Sbjct: 276 DHIVNFYGSENL 287
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 35.5 bits (78), Expect = 0.012
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAE----RACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 170
SRGFGF+ F+DP A + EL+GK++V K +++G ++++K+ F Q
Sbjct: 148 SRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTTTKKIFIGGLSTNTS-EEDMKKYFSQ 205
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 34.3 bits (75), Expect = 0.028
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++++ NL I++E LR+ F G + S +++ + G KGFG+V F S
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFES 106
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 143
G +GFG+V FE DA A +++N E +G+ + V ++ K + +
Sbjct: 94 GIGKGFGYVLFESKDAVVFA-LKMNNAEF-KGRKIRVFPSKDKPQTE 138
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 34.3 bits (75), Expect = 0.028
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 147 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRXK 323
E++ ++L S + Q +Y+++ I L F P+G I ++ + G+ K
Sbjct: 45 EIQHSIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK 103
Query: 324 GFGFVCFSS 350
GFG+V + +
Sbjct: 104 GFGYVTYEN 112
Score = 33.5 bits (73), Expect = 0.049
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 101
G S+GFG+V +E+ ++A+RA L G +++GK
Sbjct: 100 GKSKGFGYVTYENAESAQRA---LAGTHIIDGK 129
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.9 bits (74), Expect = 0.037
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
+G LY+ NL+ D+ + + F FG + ++ E GR +GFGFV S
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQS 58
Score = 29.5 bits (63), Expect = 0.80
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 143
G SRGFGFV + D A IE + V G+ + V A K E +
Sbjct: 46 GRSRGFGFVLLQSADQIAPA-IEKMNQSSVGGRNITVALALDKTENR 91
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 33.5 bits (73), Expect = 0.049
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELV 92
RG+GFV F+D AE A +LNG++L+
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLI 748
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 33.5 bits (73), Expect = 0.049
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
RGFGFV FE ++A++AC L+ K + V +AQ K
Sbjct: 12 RGFGFVTFESENSADKACD--TQYHLINNKKVEVKKAQPK 49
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 33.1 bits (72), Expect = 0.065
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +G+GF ++D + A A LNG EL G+ L V A +E+ KE + E
Sbjct: 63 GKPKGYGFCEYKDQETALSAMRNLNGYEL-NGRALRVDSA--ASEKNKEEIKSMEMTARP 119
Query: 183 RLTRY 197
++ Y
Sbjct: 120 EVSPY 124
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 299
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.5 bits (68), Expect = 0.20
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
G ++GF F F + D A+ A +L+ KE+ GK L V
Sbjct: 190 GLTKGFAFCTFSNKDEAQNAVKKLDNKEIRPGKRLGV 226
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 31.5 bits (68), Expect = 0.20
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 122
S+G+GFV DAAE AC N + ++EG+ V A
Sbjct: 50 SKGYGFVTMATSDAAELAC--KNKRPMIEGRQANVNLA 85
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 31.5 bits (68), Expect = 0.20
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL-VEGKPLYVGRAQKKAERQKE 149
G +RGFGFV F+ P+AA+ L G L V G + V ++ K ++K+
Sbjct: 369 GYTRGFGFVEFDTPEAAKEWMDYLKGGPLKVLGYNIGVEYSRPKEGQEKD 418
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 30.7 bits (66), Expect = 0.35
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELV 92
G+GFV F+ D AE A E NGK+++
Sbjct: 39 GYGFVEFDYSDDAEDAVYECNGKKML 64
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 30.7 bits (66), Expect = 0.35
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA---ERQKELKRKF 164
GFGFV F + A +A E+N K+++ G+P+ V A K+ E Q++ K+ +
Sbjct: 291 GFGFVQFTNVFDAAKALEEMNAKKIL-GRPVAVDWAVPKSMYTENQEKHKKDY 342
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 26.6 bits (56), Expect(2) = 0.37
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 125
G SR +GFV F+D ++ L ++ GK + VG+++
Sbjct: 117 GYSRNYGFVLFKDDGPSKEV---LKKSHVINGKTVDVGKSR 154
Score = 22.6 bits (46), Expect(2) = 0.37
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAK 296
+YV L ++ +R+ F FG I + K
Sbjct: 159 IYVGGLPSHFTEQTVREHFKKFGVIEAVK 187
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 30.3 bits (65), Expect = 0.46
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELV 92
+GFV FED A+ A E NGKE++
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEML 62
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 30.3 bits (65), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 101
G +RG+ FV + D A+R LN E+ +GK
Sbjct: 111 GQNRGYAFVVYTSKDDAKRCVKTLNNYEIRKGK 143
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 30.3 bits (65), Expect = 0.46
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRXKGFGFV 338
Y+ NL ++D++ L ++F + + E GR +GFGFV
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFV 127
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.9 bits (64), Expect = 0.61
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 128
SRGFGFV E+ + E + +G E EG+ L V A K
Sbjct: 82 SRGFGFVTLENQEDLEDVTRKFDGFE-YEGRRLKVAEASK 120
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 29.5 bits (63), Expect = 0.80
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 155
G S+G+ +V F + ++ +A + ++ +E +EG+P+++ KA+ K
Sbjct: 3 GRSKGYAYVEFNN-ESTVQAALAMD-REKMEGRPMFISPCVDKAKNPTTFK 51
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRXKGFGFVCF 344
+Y+KNL++ I E L+K F+ FG I V L+ + +G FV F
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDI-VALKTLKMRGQAFVVF 56
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 81 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 260
K+ E K + + A+K+ + +KE K K E+ + ER R Y + + + +R R+
Sbjct: 747 KDRKERKKIEMEEAKKREQEEKERKEKEEKERIEREEREAKEREYAERIAKQNEIDRKRR 806
Query: 261 E 263
E
Sbjct: 807 E 807
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
SRGF +V + DP+ E+A ++G + ++G+ + V
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDGGQ-IDGQEIAV 1230
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 29.1 bits (62), Expect = 1.1
Identities = 26/86 (30%), Positives = 38/86 (44%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 185
N+ FGF + DP+A+ RA I L V K L V K E K K ++ +
Sbjct: 84 NAGSFGFCEYSDPEASLRA-IRLLHNLQVGDKSLVVKVDAKTKTLLDEYKAKKKEDRKGE 142
Query: 186 LTRYQGVNLYVKNLDDTIDDERLRKE 263
R G + DD +DD L+++
Sbjct: 143 KKREDG----EADDDDDLDDATLKED 164
>SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)
Length = 198
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 135 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 248
E ++ELK K E+LK E+L Q V + + DD DD+
Sbjct: 35 EEKEELKSKCEKLKEEKLKMEQVVWWWDEYGDDDDDDD 72
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELN 77
S+G+GFV+F+DP+ +A E+N
Sbjct: 257 SKGYGFVSFKDPNDFIKAMREMN 279
>SB_12122| Best HMM Match : DUF573 (HMM E-Value=0.74)
Length = 67
Score = 28.7 bits (61), Expect = 1.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 120 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTID 242
A++K K K K+ Q+K+ T++ YVKN+ D
Sbjct: 18 ARRKTSLIKNFKTKYRQIKNRLNTKFSRSIRYVKNIGKAFD 58
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 1.9
Identities = 31/114 (27%), Positives = 50/114 (43%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
SRGFGFV F+ + A+ L+ ++G+ V L R E+L +
Sbjct: 155 SRGFGFVRFKKDEDAKNV---LSTSHRIQGRLCEV-----------RLPRPKEELNVPK- 199
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
L+V L ++ ++ L + FA FG +T + + FGFV F+S
Sbjct: 200 ------KLFVGRLPESTTEKTLMEYFAQFGEVTDVYI---PKPFRHFGFVTFAS 244
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
G SRGF FV + + AE+ NG++ VEG + V
Sbjct: 244 GGSRGFAFVDYATAEEAEKGQRAHNGRQ-VEGSNIRV 279
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELV 92
G SR GFV F D AE A + +NG +++
Sbjct: 561 GKSRQSGFVHFWSSDVAEAANVGMNGCDIL 590
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 117 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 263
R +++AE K QL+ ERL + V + + +T RLR+E
Sbjct: 580 RDRERAESASSKSEKVAQLREERLQSRERVQAFKTDYQETTLRRRLREE 628
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 269
Q +E KEL +QL+ + +YQG +LY KN T+ + R A
Sbjct: 552 QDLSETNKELASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLA 601
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G+S+G V +EDP A A NGK+ + G+ + V A+ + +
Sbjct: 215 GSSKGECTVTYEDPPTASAAIEWFNGKDFM-GQSIKVELAEARTPK 259
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.5 bits (58), Expect = 3.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELV 92
G+GFV F+D A+ +LNG+ L+
Sbjct: 39 GYGFVEFDDYRDADDCVYDLNGRNLL 64
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIEL--NGKELVEGKPLYVGRA 122
SRGFG+V F D + NG ++GK + V RA
Sbjct: 54 SRGFGYVTFADYKVTRNVLKDKVENGAHRIDGKEVEVKRA 93
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGKELVE 95
N GF FV +ED AE A EL+G + +
Sbjct: 38 NPPGFAFVEYEDYRDAEEAVRELDGANVCD 67
>SB_51389| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
Length = 343
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEF 266
Q +E KEL +QL+ + +YQG K+L D + +R KEF
Sbjct: 16 QDLSETNKELASYIDQLERSQNLQYQG-----KSLHDAKNKQRTLKEF 58
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 125
G S+GF +V + +A A +LNG E G L V A+
Sbjct: 240 GESKGFAYVTYNSVGSAIYAKEKLNGFEYPPGNKLVVKFAE 280
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.1 bits (57), Expect = 4.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 122
SR FG+V F D A A ++ G E +GK ++ GRA
Sbjct: 16 SRNFGYVTFRDEQDAADAMKQMGG-ESGKGKEIF-GRA 51
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 27.1 bits (57), Expect = 4.3
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 36 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ-KELKRKFEQLKSERLTRYQGVNL 212
E D + E+ KE +E + R + K ER+ KE KR+ +QL+ E+ + + + +
Sbjct: 889 EKKDNEKARLKEMKDKEKIEKEK----REKDKREREEKERKRRQQQLEKEKKEKEKKLLI 944
Query: 213 YVKNLDDTIDDERLRKE 263
+ + ERLR++
Sbjct: 945 EKEKREKEKQKERLREK 961
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 134
GFGFV F A +A +LNG +V+G+ + V +++
Sbjct: 125 GFGFVTFNTAAEANKAREKLNG-TIVDGRKVEVSLCMEQS 163
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 27.1 bits (57), Expect = 4.3
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +3
Query: 117 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAK 296
R +KK +QK+ KRK + +K++ + + V+ D +++ K+ A G +K
Sbjct: 151 RQEKKIRKQKQEKRKRKTVKADFNSSEEEVSSQKTKASSRKDQKKMNKQMANKGKGAKSK 210
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 26.6 bits (56), Expect = 5.7
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
RGFGFV FE + A +N EL G+ + V A K + KE + + L
Sbjct: 46 RGFGFVEFEFAEDTAAAIDNMNESELF-GRTIRVNLA--KPMKIKEGYSRAVWSEDSWLQ 102
Query: 192 RYQGVNLYVKNLDDT 236
++ G L K+ +T
Sbjct: 103 KHAGQTLEEKDSTET 117
>SB_35499| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.2)
Length = 263
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 36 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
++ + +ER E +E + V + Q+ ER+++L+ + + LKSE L
Sbjct: 176 QEKEESERRLEEFREEERKRMEQWKVQQEQESKEREQKLEEEVQNLKSELL 226
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERA 62
G S+ +GFV F+D +A E+A
Sbjct: 100 GRSKKYGFVFFKDEEACEKA 119
>SB_17463| Best HMM Match : Protamine_P2 (HMM E-Value=5.6)
Length = 148
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +3
Query: 45 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 224
DAA + G E VE K + + K+ ERQ++ +R + ER + G + +K
Sbjct: 57 DAAPKQRGRERGLERVEEKERFDLQGHKQRERQRQRER-----ERERERKIHG--MIMKE 109
Query: 225 LDDTIDDERLRK 260
L+ +++ER R+
Sbjct: 110 LEKEMEEERQRQ 121
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGK 83
N GF F FED AE A EL+G+
Sbjct: 36 NPPGFAFCVFEDRRDAEDAVRELDGR 61
>SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 263
Q +A ++ +L +F QLK+E L + + + L + ER+++E
Sbjct: 202 QVRATQRPDLSPEFRQLKAEHLEKMTALRHESELLKQMTEIERMKRE 248
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNG 80
+R GFV F+ +AA++A E+NG
Sbjct: 142 NRSQGFVTFDTWEAADKAIDEMNG 165
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
++V NLD I E L F+ G I ++ +DG+ + ++ F+
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFA 119
>SB_23651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1174
Score = 26.2 bits (55), Expect = 7.5
Identities = 19/75 (25%), Positives = 35/75 (46%)
Frame = +3
Query: 39 DPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYV 218
D R+ ++ KE EG+ R + + ER++E +++ ++ S R R+Q
Sbjct: 897 DTFTTRRSRLQDQNKENEEGEVSSWRRKRLEREREREKEKEKAEVPSYRRNRFQDAE-KE 955
Query: 219 KNLDDTIDDERLRKE 263
+ + ERL KE
Sbjct: 956 REQRKVRESERLEKE 970
>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
Length = 504
Score = 26.2 bits (55), Expect = 7.5
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 5/109 (4%)
Frame = +3
Query: 36 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE--LKRKFEQLKSERLTRYQGVN 209
++PD + C LN KELV +P G+ Q K K+ + ++ + N
Sbjct: 123 KEPDLLDFECSGLNEKELVCDRP---GKKQDKESESKDDNIVKEINIKDEKEEALLSEFN 179
Query: 210 LYVKNLDDTIDDE---RLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
++K + DE R R + +AK+ D +G FS
Sbjct: 180 AFLKKYKKSYQDETEYRHRMKIFESNMRKAAKMQKMDSGTARYGPTIFS 228
>SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83)
Length = 401
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 269
Q +E KEL +QL+ + +YQG +L+ KN T+ + R A
Sbjct: 66 QDLSETNKELASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLA 115
>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
Length = 1461
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 120 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 233
AQK+ E ++ L++ LK E +N+Y+KN+ D
Sbjct: 96 AQKEEEDKRWLEKAKTILKEEYGNSSDIINIYIKNIMD 133
>SB_48691| Best HMM Match : RTC_insert (HMM E-Value=4e-06)
Length = 187
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 177 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 299
+ER+T+ V + N D +DDER + F P S K+
Sbjct: 119 AERITKVTHVET-ISNDDGNVDDERKQWNFIPNSNNISGKM 158
>SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
Length = 251
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 269
Q +E KEL +QL+ + +YQG +L+ KN T+ + R A
Sbjct: 189 QDLSETNKELASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLA 238
>SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38)
Length = 295
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 269
Q +E KEL +QL+ + +YQG +L+ KN T+ + R A
Sbjct: 189 QDLSETNKELASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLA 238
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 147 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 263
+++ + EQL SE T+ + +N ++ LDDT + KE
Sbjct: 1475 KIEAEKEQLLSELKTQKEKLNTVIEELDDTKSTLEIIKE 1513
>SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
Length = 251
Score = 25.8 bits (54), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLY-VKNLDDTIDDERLRKEFA 269
Q +E KEL +QL+ + +YQG +L+ KN T+ + R A
Sbjct: 189 QDLSETNKELASYIDQLERSQNLQYQGKSLHEAKNKQRTLKEFLSRANLA 238
>SB_10916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 25.8 bits (54), Expect = 9.9
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 195 NELGVQISVVQTYASTPFDVQLSFVHVQHREAYPQLA 85
+ LGV S T P V LSF+ RE PQL+
Sbjct: 100 DSLGVSDSSEVTSLQQPRKVSLSFLKTNPRELKPQLS 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,504,215
Number of Sequences: 59808
Number of extensions: 139566
Number of successful extensions: 610
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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