Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30261
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.34 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   3.2  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.2  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.4  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    20   9.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.34
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 79  PFNSMQALSAASGSSKATKPKP 14
           P +S + LSAA+ SS +T P+P
Sbjct: 823 PASSPRYLSAAATSSTSTSPRP 844


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 184 RSDFSCSNLRFNSF*RSAFFCARPT*RGLPSTSSLP 77
           R+D S S+   +S   + F+  +PT    P  S LP
Sbjct: 368 RTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLLP 403


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 54  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 170
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKFRVKFEE 121


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 54  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 170
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPF 275
           Y G+   +  LD+++ D   RK++ PF
Sbjct: 424 YNGLPTVMSGLDESLSDVTPRKKY-PF 449


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 54  ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 170
           +R  I+   K LVE KP        K +  K+ + KFE+
Sbjct: 83  QREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEE 121


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 270 VQILCADVHH 241
           ++I C+DVHH
Sbjct: 69  LRIRCSDVHH 78


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 316 RPSSSITFADVIVPNG 269
           RP++ +TF   + PNG
Sbjct: 75  RPTAGMTFNGGVGPNG 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,730
Number of Sequences: 438
Number of extensions: 1249
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)