Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30261
(350 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 130 2e-31
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 130 3e-31
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 129 4e-31
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 127 2e-30
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 124 2e-29
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 109 7e-25
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 107 2e-24
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 103 4e-23
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 60 3e-10
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 58 1e-09
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 58 2e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 58 2e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 58 2e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 58 2e-09
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 57 3e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 55 1e-08
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 55 1e-08
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 55 1e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 54 2e-08
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 53 5e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 53 6e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 52 8e-08
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 51 2e-07
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 51 2e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 3e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 50 4e-07
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 49 1e-06
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 49 1e-06
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 49 1e-06
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 48 1e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 46 5e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 7e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 7e-06
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 46 7e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 46 7e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 45 1e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 45 2e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 45 2e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 44 2e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 44 2e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 44 2e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 44 4e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 44 4e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 44 4e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 43 5e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 43 5e-05
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 43 5e-05
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 43 5e-05
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 43 7e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 43 7e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 42 9e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 9e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 9e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 1e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 1e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 1e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 42 2e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 41 3e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 41 3e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 40 4e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 40 4e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 40 4e-04
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 40 4e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 40 5e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 40 5e-04
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 40 5e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 40 5e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 40 6e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 40 6e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 39 8e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 39 8e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.001
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 38 0.001
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 38 0.001
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.002
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 38 0.002
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.002
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 38 0.002
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 38 0.002
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.002
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.002
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.002
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 38 0.002
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 38 0.002
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.002
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.003
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 37 0.003
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 37 0.003
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 37 0.003
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 37 0.003
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.003
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 37 0.004
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.008
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.008
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.010
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 35 0.013
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.018
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 35 0.018
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.018
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.018
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.018
At2g15500.1 68415.m01774 hypothetical protein 34 0.023
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 34 0.031
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 33 0.040
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.040
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.040
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.040
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 33 0.040
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 33 0.040
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 33 0.040
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.053
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.053
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 33 0.071
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 32 0.093
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.093
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.093
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 32 0.12
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 32 0.12
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.12
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 31 0.16
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 31 0.16
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 31 0.22
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 31 0.22
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.22
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 31 0.29
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 31 0.29
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 31 0.29
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.29
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.29
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 31 0.29
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.29
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.29
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.29
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 0.38
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 0.38
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 30 0.38
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 0.50
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 30 0.50
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 0.66
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 0.66
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 0.66
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 0.66
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 0.66
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 0.66
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 29 0.87
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 0.87
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 1.2
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 1.2
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 1.2
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 1.2
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 1.5
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 28 1.5
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 28 1.5
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 1.5
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 1.5
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 1.5
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 28 2.0
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 28 2.0
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 28 2.0
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 2.0
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 28 2.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 28 2.0
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 28 2.0
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 2.0
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 2.0
At4g10610.1 68417.m01735 RNA-binding protein, putative 27 2.7
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 2.7
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 2.7
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 2.7
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 2.7
At5g18610.1 68418.m02203 protein kinase family protein contains ... 27 3.5
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 27 3.5
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 27 3.5
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 3.5
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 27 4.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 27 4.6
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 27 4.6
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 27 4.6
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 27 4.6
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA... 26 6.1
At3g53860.1 68416.m05950 expressed protein several hypothetical ... 26 6.1
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 26 6.1
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 26 6.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 26 6.1
At1g49190.1 68414.m05515 two-component responsive regulator fami... 26 6.1
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 26 8.1
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 26 8.1
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 26 8.1
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 26 8.1
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 26 8.1
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 26 8.1
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 26 8.1
At3g04550.1 68416.m00483 expressed protein 26 8.1
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 26 8.1
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 26 8.1
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 130 bits (315), Expect = 2e-31
Identities = 67/117 (57%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SR FGFV FE+P+ A RA LNGK+ + K YVG+AQKK+ER+ EL R++EQ S+
Sbjct: 262 GKSRCFGFVNFENPEDAARAVEALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSD 320
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
++ G+NLYVKNLDDT+ DE+LR+ FA FGTITS KVM + G KG GFV FS+
Sbjct: 321 GGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSA 377
Score = 74.1 bits (174), Expect = 2e-14
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKEL-KRKFEQLKS 179
G SRG+GFV F+ D+A+ A +LNGK ++ K ++VG +K ER+ K KF
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGK-VLNDKQIFVGPFLRKEERESAADKMKF----- 224
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
N+YVKNL + D+ L+ F +G+I+SA VM + DG+ + FGFV F +
Sbjct: 225 --------TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 274
Score = 59.3 bits (137), Expect = 7e-10
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 176
G S+G GFVAF A R E+NGK +V GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 365 GTSKGSGFVAFSAASEASRVLNEMNGK-MVGGKPLYVALAQRKEERRAKLQAQFSQMR 421
Score = 51.2 bits (117), Expect = 2e-07
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S G+G+V + + D AE+A +LN L GK + + + + +
Sbjct: 86 SLGYGYVNYSNTDDAEKAMQKLNYSYL-NGKMIRITYSSRDSS----------------- 127
Query: 189 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCFSS 350
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+ +G+GFV F +
Sbjct: 128 ARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDT 183
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 130 bits (313), Expect = 3e-31
Identities = 66/117 (56%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+GFGFV FE+ D A RA LNGK + K +VG+AQKK+ER+ ELK+KFEQ E
Sbjct: 261 GKSKGFGFVNFENSDDAARAVDALNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKE 319
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
+ QG NLYVKNLD+++ D++LR+ FAPFGTITS KVM + G +G GFV FS+
Sbjct: 320 AADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFST 376
Score = 72.5 bits (170), Expect = 7e-14
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV ++ +AA+ A +LNG L+ K +YVG K +R E++K
Sbjct: 170 GQSKGYGFVQYDTDEAAQGAIDKLNGM-LLNDKQVYVGPFVHKLQRDPS----GEKVKF- 223
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
N+YVKNL +++ DE L K F FG TS +M + +G+ KGFGFV F +
Sbjct: 224 -------TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFEN 273
Score = 61.3 bits (142), Expect = 2e-10
Identities = 30/58 (51%), Positives = 40/58 (68%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 176
G SRG GFVAF P+ A RA E+NGK +V KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVT-KPLYVALAQRKEDRKARLQAQFSQMR 420
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 129 bits (312), Expect = 4e-31
Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
GNSR FGFV FE +AA A ++NG L + LYVGRAQKK+ER++EL+RKFEQ +
Sbjct: 266 GNSRCFGFVNFECTEAAASAVEKMNGISLGDDV-LYVGRAQKKSEREEELRRKFEQERIN 324
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
R + QG NLY+KNLDD++DDE+L++ F+ +G +TS+KVML G +GFGFV +S+
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSN 381
Score = 72.9 bits (171), Expect = 5e-14
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV FE ++A+ A +LNG L+ K ++VG ++ ER ++ E +
Sbjct: 173 GRSKGYGFVQFEKEESAQAAIDKLNGM-LMNDKQVFVGHFIRRQERARD-----ENTPTP 226
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCF 344
R T N+YVKNL I ++ LRK F FG I+SA VM + G + FGFV F
Sbjct: 227 RFT-----NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Score = 61.3 bits (142), Expect = 2e-10
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 179
G SRGFGFVA+ +P+ A RA E+NGK ++ KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGK-MIGRKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = +3
Query: 189 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GR KG+GFV F
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQF 183
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 127 bits (307), Expect = 2e-30
Identities = 62/117 (52%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
GNSR FGFV F P+AA A ++NG L E LYVGRAQKK++R++EL+RKFEQ +
Sbjct: 262 GNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDV-LYVGRAQKKSDREEELRRKFEQERIS 320
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
R + QG NLY+KNLDD+++DE+L++ F+ +G +TS KVM+ G +GFGFV +S+
Sbjct: 321 RFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSN 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV FE + A+ A +LNG L+ K ++VG ++ +R + +S
Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGM-LLNDKQVFVGHFVRRQDRARS--------ESG 219
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
+ + N+YVKNL I D+ L+K F +G I+SA VM + G + FGFV F S
Sbjct: 220 AVPSF--TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVS 274
Score = 61.7 bits (143), Expect = 1e-10
Identities = 31/59 (52%), Positives = 41/59 (69%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS 179
G SRGFGFVA+ +P+ A A E+NGK ++ KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGK-MIGRKPLYVALAQRKEERQAHLQSLFTQIRS 422
Score = 52.0 bits (119), Expect = 1e-07
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = +3
Query: 189 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GR KG+GFV F
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 124 bits (298), Expect = 2e-29
Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+GFGFV FE+ D A RA LNG + + K YVGRAQKK+ER+ EL+ ++EQ E
Sbjct: 66 GKSKGFGFVNFENADDAARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKE 124
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
++Q NLYVKNLD +I DE+L++ F+PFGT+TS+KVM + +G KG GFV F++
Sbjct: 125 AADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFAT 181
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 176
G S+G GFVAF P+ A A +L+GK ++E KPLYV AQ+K +R+ L+ +F Q++
Sbjct: 169 GTSKGSGFVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQRKEDRRVRLQAQFSQVR 225
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 156 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFG 332
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA VM + +G+ KGFG
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 333 FVCFSS 350
FV F +
Sbjct: 73 FVNFEN 78
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 109 bits (261), Expect = 7e-25
Identities = 61/118 (51%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SR FGFV FE +AA A ++NG +V+ K L+VGRAQ+K R ++LK KFE K
Sbjct: 156 GKSRRFGFVNFEKAEAAVTAIEKMNGV-VVDEKELHVGRAQRKTNRTEDLKAKFELEKII 214
Query: 183 R-LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
R + +G+NLYVKNLDD++D+ +L + F+ FGTITS KVM+ +G KG GFV FS+
Sbjct: 215 RDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272
Score = 49.2 bits (112), Expect = 8e-07
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F + AC NG L+ + ++V + + K R F
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGT-LIRNQHIHVCPFVSRGQWDKS--RVF------ 118
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCF 344
N+YVKNL +T D L++ F FG ITSA VM + +G+ + FGFV F
Sbjct: 119 -------TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNF 166
Score = 46.8 bits (106), Expect = 4e-06
Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFSS 350
N++VKNLD++ID+++L F+ FG + S KV + G KG+GFV F S
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYS 80
Score = 45.6 bits (103), Expect = 9e-06
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 164
G S+G GFV F + A +A +++NGK +V KP+YV AQ K + + L+ +F
Sbjct: 260 GISKGVGFVEFSTSEEASKAMLKMNGK-MVGNKPIYVSLAQCKEQHKLHLQTQF 312
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 107 bits (258), Expect = 2e-24
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
RG+ FV F++P+ A RA +NG + K LYVGRAQKKAER++ L+ +F++ E+
Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKF-GSKCLYVGRAQKKAEREQLLREQFKEKHEEQKM 299
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
+ N+YVKN++ + +E LRK F+ GTITS K+M E G+ KGFGFVCFS+
Sbjct: 300 IAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFST 353
Score = 72.5 bits (170), Expect = 7e-14
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRG+GFV FE DAA A LN +V K +YVG+ KK +R K E
Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNST-IVADKEIYVGKFMKKTDRVKP---------EE 198
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-XKGFGFVCFSS 350
+ T NLY+KNLD + ++ LR++FA FG I S + ++ R +G+ FV F +
Sbjct: 199 KYT-----NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 164
G S+GFGFV F P+ A A +G ++ GKPLYV AQKK +R+ +L+ +F
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHG-QMFHGKPLYVAIAQKKEDRKMQLQVQF 393
Score = 47.2 bits (107), Expect = 3e-06
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Frame = +3
Query: 192 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRXKGFGFVCF 344
R GV N++VKNL +++ + L+ F FG I S KV LEDG+ +G+GFV F
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQF 159
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 103 bits (246), Expect = 4e-23
Identities = 59/118 (50%), Positives = 82/118 (69%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKS 179
G SRGFGFV F +P+ A++A L G +L K L+VG+A KK ER++ LK+KF + +
Sbjct: 239 GRSRGFGFVNFCNPENAKKAMESLCGLQL-GSKKLFVGKALKKDERREMLKQKFSDNFIA 297
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFSS 350
+ R+ NLYVKNL +++++ RLR+ F +G I SAKVM E+GR KGFGFVCFS+
Sbjct: 298 KPNMRWS--NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSN 353
Score = 68.1 bits (159), Expect = 2e-12
Identities = 43/116 (37%), Positives = 61/116 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S + ++ F+ P +A A LN +L +GK + + +Q+ L
Sbjct: 59 GKSMCYAYINFDSPFSASNAMTRLNHSDL-KGKAMRIMWSQR-------------DLAYR 104
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+ KGFGFV F +
Sbjct: 105 RRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDT 160
Score = 65.3 bits (152), Expect = 1e-11
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+GFGFV F+ +A A L+G +V GK L+V + K ER +
Sbjct: 148 GQSKGFGFVQFDTEQSAVSARSALHGS-MVYGKKLFVAKFINKDER------------AA 194
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCF 344
N+YVKNL +T+ D+ L F+ +GT++S VM + GR +GFGFV F
Sbjct: 195 MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNF 249
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 167
G S+GFGFV F + + +++A LNG LV+GKP+ V A++K +R K L++ F+
Sbjct: 341 GRSKGFGFVCFSNCEESKQAKRYLNGF-LVDGKPIVVRVAERKEDRIKRLQQYFQ 394
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 60.5 bits (140), Expect = 3e-10
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G RGFGFV F DP +R L K ++ + + V RA + E+Q + + L +
Sbjct: 44 GRPRGFGFVIFSDPSVLDRV---LQEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTS 98
Query: 183 RLTRYQGVN----LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
R + N ++V L T+ DE R+ F +G +T +M + R +GFGFV F
Sbjct: 99 RSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSF 158
Query: 345 SS 350
S
Sbjct: 159 DS 160
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
RGFGFV+F+ DA + + + +L GK + V RA K
Sbjct: 151 RGFGFVSFDSEDAVD-SVLHKTFHDL-SGKQVEVKRALPK 188
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 58.4 bits (135), Expect = 1e-09
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRGFGFV E A + NG EL +G+PL V +R+ R
Sbjct: 129 GRSRGFGFVTMSSVSEVEAAAQQFNGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 183 RLTRY---------QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGF 329
+ Y G +YV NL +DD L F+ G + A+V+ + GR KGF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 330 GFVCFSS 350
GFV + S
Sbjct: 248 GFVTYDS 254
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G S+GFGFV ++ + A L+G +L +G+ + V A+ + R++
Sbjct: 242 GRSKGFGFVTYDSSQEVQNAIKSLDGADL-DGRQIRVSEAEARPPRRQ 288
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGF+ F DP +ER ++ K +++G+ + +A + + Q+ LKR +
Sbjct: 44 GRARGFGFIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLM 99
Query: 183 RLTRYQG---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCFS 347
G ++V L +I +E + F FGTI VM + R +GFGF+ F
Sbjct: 100 SPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
Query: 348 S 350
S
Sbjct: 160 S 160
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
L++ + D+ERLR F+ +G + A +M + GR +GFGF+ F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF+ F+ DA +R ELNGK LVE K
Sbjct: 151 RGFGFITFDSDDAVDRVLHKTFHELNGK-LVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGF+ F DP +ER ++ K +++G+ + +A + + Q+ LKR +
Sbjct: 44 GRARGFGFIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLM 99
Query: 183 RLTRYQG---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCFS 347
G ++V L +I +E + F FGTI VM + R +GFGF+ F
Sbjct: 100 SPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
Query: 348 S 350
S
Sbjct: 160 S 160
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
L++ + D+ERLR F+ +G + A +M + GR +GFGF+ F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF+ F+ DA +R ELNGK LVE K
Sbjct: 151 RGFGFITFDSDDAVDRVLHKTFHELNGK-LVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGF+ F DP +ER ++ K +++G+ + +A + + Q+ LKR +
Sbjct: 44 GRARGFGFIVFADPCVSERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLM 99
Query: 183 RLTRYQG---VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCFS 347
G ++V L +I +E + F FGTI VM + R +GFGF+ F
Sbjct: 100 SPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 159
Query: 348 S 350
S
Sbjct: 160 S 160
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
L++ + D+ERLR F+ +G + A +M + GR +GFGF+ F+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFA 55
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF+ F+ DA +R ELNGK LVE K
Sbjct: 151 RGFGFITFDSDDAVDRVLHKTFHELNGK-LVEVK 183
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 57.6 bits (133), Expect = 2e-09
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
SRGFGFV + AE+A + N E V G+ L V RA + R + R ++
Sbjct: 153 SRGFGFVTMSTVEEAEKAVEKFNSFE-VNGRRLTVNRAAPRGSRPERQPRVYD------- 204
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCFSS 350
+YV NL +D RL + F+ G + A+V+ E GR +GFGFV S+
Sbjct: 205 ---AAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
Score = 33.1 bits (72), Expect = 0.053
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G SRGFGFV + + A L+G+ L EG+ + V A+++ R
Sbjct: 245 GRSRGFGFVQMSNENEVNVAIAALDGQNL-EGRAIKVNVAEERTRR 289
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 57.2 bits (132), Expect = 3e-09
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
SRGFGFV D AE A + N +L G+ L V +A + R + R +E
Sbjct: 190 SRGFGFVTMSSVDEAETAVEKFNRYDL-NGRLLTVNKAAPRGSRPERAPRVYE------- 241
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
+YV NL +D+ RL + F+ G + A+V+ E GR +GFGFV S
Sbjct: 242 ---PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 143
G SRGFGFV D D A L+G+ L EG+ + V A+++ R+
Sbjct: 282 GRSRGFGFVTMSDVDELNEAISALDGQNL-EGRAIRVNVAEERPPRR 327
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKS 179
G +RGFGFV F DP+ AER + K +++GK + A+K R + K
Sbjct: 44 GRARGFGFVVFADPNVAERVVLL---KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQ 97
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L ++ + +K FA FG IT VM + R +GFGF+ + S
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF++++ +A ++ ELNGK +VE K
Sbjct: 147 RGFGFISYDSEEAVDKVLQKTFHELNGK-MVEVK 179
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 55.2 bits (127), Expect = 1e-08
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKS 179
G +RGFGFV F DP+ AER + K +++GK + A+K R + K
Sbjct: 44 GRARGFGFVVFADPNVAERVVLL---KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQ 97
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L ++ + +K FA FG IT VM + R +GFGF+ + S
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF++++ +A ++ ELNGK +VE K
Sbjct: 147 RGFGFISYDSEEAVDKVLQKTFHELNGK-MVEVK 179
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 55.2 bits (127), Expect = 1e-08
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGF+ F DP AER ++ K +++G+ + +A + + Q+ LKR +
Sbjct: 53 GRARGFGFIVFADPSVAERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPM--H 106
Query: 183 RLTRYQGVN--------LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFG 332
++ G N ++V L +I + + F FGTI VM + R +GFG
Sbjct: 107 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166
Query: 333 FVCFSS 350
F+ F S
Sbjct: 167 FITFDS 172
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 54.4 bits (125), Expect = 2e-08
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F D + +A E+NG + + + +G A + + +++ + S
Sbjct: 238 GRSKGYGFVRFGDENERTKAMTEMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPSG 294
Query: 183 RLTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
TR +G ++V LD ++ DE L++ F+ FG I S K+ + KG GFV F
Sbjct: 295 AFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFVQF 348
Score = 43.6 bits (98), Expect = 4e-05
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G+S G+GFV FE D A++ E NG + + + +K L+ L
Sbjct: 143 GSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDL--- 199
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE--DGRXKGFGFVCF 344
+++V +L + D L + F+ + ++ +AKV+L+ GR KG+GFV F
Sbjct: 200 --------SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 53.2 bits (122), Expect = 5e-08
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F D + +A E+NG + + + +G A + + +++ + +
Sbjct: 236 GRSKGYGFVRFGDENERTKAMTEMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPNG 292
Query: 183 RLTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
LTR +G ++V LD ++ DE L++ F FG I S K+ + KG GFV F
Sbjct: 293 TLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQF 346
Score = 43.2 bits (97), Expect = 5e-05
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S G+GFV FE D A++ E NG + + + +K L+ L
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL--- 197
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE--DGRXKGFGFVCF 344
+++V +L + D L + F+ + ++ +AKV+L+ GR KG+GFV F
Sbjct: 198 --------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 52.8 bits (121), Expect = 6e-08
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SR FGF + + A +LNG VEG+ + V +K +L L+SE
Sbjct: 114 GRSRRFGFATMKSVEDANAVVEKLNGNT-VEGREIKVNITEKPIASSPDLS----VLQSE 168
Query: 183 RLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXK--GFGFVCFSS 350
+YV NL T+ E L F+ G + SAKV G K GFGFV FSS
Sbjct: 169 DSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSS 227
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 52.4 bits (120), Expect = 8e-08
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR-KFEQLKS 179
G RGFGFVAF DP +R L K ++ + + V RA + E+ + F ++
Sbjct: 44 GRPRGFGFVAFSDPAVIDRV---LQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRN 100
Query: 180 -ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
+ + ++V L + + R F +G ++ A +M++ R +GFGFV F S
Sbjct: 101 FDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAE----RACIELNGKEL 89
RGFGFV+F+ D+ + + +LNGK++
Sbjct: 151 RGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGFV F DP AE I + K ++G+ + +A + ++ + ++
Sbjct: 44 GRARGFGFVVFADPAVAE---IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGS 100
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCFSS 350
+ ++V L ++ + + F FGT T VM + R +GFGF+ + S
Sbjct: 101 PGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACI----ELNGKELVEGK 101
RGFGF+ ++ +A E+ + ELNGK +VE K
Sbjct: 149 RGFGFITYDSEEAVEKVLLKTFHELNGK-MVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 50.8 bits (116), Expect = 2e-07
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGFGFV F DP AE I + K ++G+ + +A + ++ + ++
Sbjct: 44 GRARGFGFVVFADPAVAE---IVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGS 100
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCFSS 350
+ ++V L ++ + + F FGT T VM + R +GFGF+ + S
Sbjct: 101 PGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACI----ELNGKELVEGK 101
RGFGF+ ++ +A E+ + ELNGK +VE K
Sbjct: 149 RGFGFITYDSEEAVEKVLLKTFHELNGK-MVEVK 181
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.4 bits (115), Expect = 3e-07
Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRGF FV + + L+G E Y+GRA K K K E L E
Sbjct: 123 GQSRGFAFVTMSNVEDCNIIIDNLDGTE-------YLGRALKVNFADKPKPNK-EPLYPE 174
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
T ++ L+V NL T+ E L F G + A+V+ + GR +G+GFVC+SS
Sbjct: 175 --TEHK---LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRG+GFV + E A L+G EL EG+ + V AQ K
Sbjct: 215 GRSRGYGFVCYSSKAEMETALESLDGFEL-EGRAIRVNLAQGK 256
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 50.0 bits (114), Expect = 4e-07
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE-- 182
SRG G+V F D + A I L+G+ L+ G+P+ V K +E +K L +
Sbjct: 222 SRGIGYVEFYDTMSVPMA-IALSGQPLL-GQPVMV----KPSEAEKNLVQSTTAAAGAGG 275
Query: 183 RLTRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRXKGFGFVCFS 347
L Y G LYV NL + ++ LRK F FG++ +V E G KGFGFV F+
Sbjct: 276 MLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFA 333
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 48.8 bits (111), Expect = 1e-06
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G RGFGF+ F DP ++ + ++ GK + + R K + K +K++
Sbjct: 57 GQPRGFGFITFADPSVVDKV---IEDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTK 109
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
+ ++V + T+ ++ L+ FA +G + +V+ E R +GFGFV F S
Sbjct: 110 K--------IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 48.8 bits (111), Expect = 1e-06
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G RGFGF+ F DP ++ + ++ GK + + R K + K +K++
Sbjct: 57 GQPRGFGFITFADPSVVDKV---IEDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTK 109
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
+ ++V + T+ ++ L+ FA +G + +V+ E R +GFGFV F S
Sbjct: 110 K--------IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 48.8 bits (111), Expect = 1e-06
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS- 179
G SRG G+V ++A+ A L+G E V G+ + R + + +R E L S
Sbjct: 146 GESRGSGYVTMGSINSAKIAIASLDGTE-VGGREM---RVRYSVDMNPGTRRNPEVLNST 201
Query: 180 -ERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCFS 347
+++ Y+ + +YV NL + LR F+ FGTI S +V+ + GR + F F+ F+
Sbjct: 202 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 261
Query: 348 S 350
S
Sbjct: 262 S 262
Score = 35.9 bits (79), Expect = 0.008
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Frame = +3
Query: 6 NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 185
+S F + P A+ I+++ EL L + ++ + + E + K+E
Sbjct: 45 SSNSFHHSSLSRPFVAQPLQIKVSSSEL---SVLDEEKEEEVVKGEAEPNKDSVVSKAEP 101
Query: 186 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
+ + + LYV N+ + D +L F PFGT+ S +V + G +G G+V S
Sbjct: 102 VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGS 158
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 48.4 bits (110), Expect = 1e-06
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
GN RGFGFV F D AE+ L +++ + + + R + ++ ++K + K
Sbjct: 104 GNPRGFGFVTFADSAVAEKV---LEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRK-- 158
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L ++++ L+ F +G I ++M + GR +GFGFV F +
Sbjct: 159 ---------IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT 207
Score = 31.5 bits (68), Expect = 0.16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+ D+ +R + EL + K + + RA+ K
Sbjct: 195 GRSRGFGFVTFQTEDSVDRLFSDGKVHELGD-KQVEIKRAEPK 236
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 46.4 bits (105), Expect = 5e-06
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG-RAQKKAERQKELKRKFEQLKS 179
G S+G+GFV F D + RA E+NG + +P+ +G A K A + + Q +
Sbjct: 193 GRSKGYGFVRFADENEQMRAMTEMNG-QYCSTRPMRIGPAANKNALPMQPAMYQNTQGAN 251
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGF 329
++V LD + D+ L+ F FG + K+ G+ GF
Sbjct: 252 AGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI--PPGKRCGF 299
Score = 37.9 bits (84), Expect = 0.002
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY-VGRAQKKAERQKELKRKFEQLKS 179
G S G+GF+ F AER NG + + + + AQ A +++F+
Sbjct: 98 GQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAG-----EKRFQ---- 148
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRXKGFGFVCFS 347
T ++V +L + D L F +G++ AKV+L+ GR KG+GFV F+
Sbjct: 149 ---TEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.0 bits (104), Expect = 7e-06
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
RY L+V L DD L++ F FG +T A V+ E GR +GFGFV FS
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 134
G SRGFGFV+F D+A A E++GKEL G+ + V A +++
Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKEL-NGRQIRVNLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 46.0 bits (104), Expect = 7e-06
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
RY L+V L DD L++ F FG +T A V+ E GR +GFGFV FS
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA 134
G SRGFGFV+F D+A A E++GKEL G+ + V A +++
Sbjct: 73 GRSRGFGFVSFSCEDSANNAIKEMDGKEL-NGRQIRVNLATERS 115
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.0 bits (104), Expect = 7e-06
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
+ +GF+ + + A+ A LN +L GKP+ R K ++ +K L
Sbjct: 66 QNYGFIEYRSEEDADYAIKVLNMIKL-HGKPI---RVNKASQDKKSLD------------ 109
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRXKGFGFVCFSS 350
G NL++ NLD +D++ L F+ FG I S ++ D G +GFGF+ + S
Sbjct: 110 --VGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 33.9 bits (74), Expect = 0.031
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
GNSRGFGF++++ +A++ A + G+ L + + V A KK
Sbjct: 151 GNSRGFGFISYDSFEASDAAIESMTGQYL-SNRQITVSYAYKK 192
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 46.0 bits (104), Expect = 7e-06
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE------LKRKF 164
G RGFGFV F + +A L + GKP+ V +A +K E ++ L+RK
Sbjct: 44 GKPRGFGFVRFANDCDVVKA---LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKV 100
Query: 165 EQLKSE-RLTRYQGV-----NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---R 317
+Q+ R GV ++V L +E + F FG T V++ DG R
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDV-VVMHDGVTNR 159
Query: 318 XKGFGFVCFSS 350
+GFGFV + S
Sbjct: 160 PRGFGFVTYDS 170
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 45.2 bits (102), Expect = 1e-05
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 197
+GFV + D +A A + LNG+ L G+P+ V A +R+ + F
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLF-GQPIKVNWAYATGQRE-DTSSHF----------- 144
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
N++V +L + D L + F+ F + + A+VM + GR +GFGFV F
Sbjct: 145 ---NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 35.9 bits (79), Expect = 0.008
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL----------VEGKPLYVGRAQKKAERQKEL 152
G SRGFGFV+F + A+ A E+NGK L +G + + EL
Sbjct: 182 GRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVEL 241
Query: 153 KRKFEQLKSERL------TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG 314
+ E L Q +YV NL + L + F G +V ++
Sbjct: 242 TTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ-- 299
Query: 315 RXKGFGFVCFSS 350
R KGFGFV +++
Sbjct: 300 RDKGFGFVRYNT 311
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 44.8 bits (101), Expect = 2e-05
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G ++G+GFV F D RA E+NG +P+ +G A K + +R Q +
Sbjct: 194 GRTKGYGFVRFSDESEQIRAMTEMNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAA 250
Query: 183 RLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
+T N ++V LD ++ D+ L+ F+ +G I K+ K GFV FS
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFS 304
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 44.8 bits (101), Expect = 2e-05
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G ++G+GFV F D RA E+NG +P+ +G A K + +R Q +
Sbjct: 194 GRTKGYGFVRFSDESEQIRAMTEMNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAA 250
Query: 183 RLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
+T N ++V LD ++ D+ L+ F+ +G I K+ K GFV FS
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFS 304
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 44 GRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L +DE L++ F+ FG + +K++ E GR +GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 44 GRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L +DE L++ F+ FG + +K++ E GR +GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+D A A E+NGKEL +G+ + V AQ +
Sbjct: 44 GRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRVITVNEAQSR 85
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L +DE L++ F+ FG + +K++ E GR +GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 43.6 bits (98), Expect = 4e-05
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G RGFGFV + D ++ +++ + +G +Q E+KR + S
Sbjct: 80 GQPRGFGFVTYADSSVVDK---------VIQDNHIIIG-------KQVEIKRTIPR-GSM 122
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++ ++V + ++DD+ ++ F FG + ++M + GR +GFGFV + S
Sbjct: 123 SSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV +E D + + N EL G + + +A+ K
Sbjct: 168 GRSRGFGFVTYESEDMVDHLLAKGNRIEL-SGTQVEIKKAEPK 209
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
R L++ L DD LR FA FG + AKV++ E GR +GFGFV F+
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F D AA A E++GKEL G+ + V A +
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
R L++ L DD LR FA FG + AKV++ E GR +GFGFV F+
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F D AA A E++GKEL G+ + V A +
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKEL-NGRHIRVNPANDR 114
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 43.2 bits (97), Expect = 5e-05
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 197
+GFV + D A A + LNG+ + G+P+ V A +R+ + F
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIF-GQPMKVNWAYATGQRE-DTSSHF----------- 148
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
N++V +L + D L F+ F + + A+VM + GR +GFGFV F
Sbjct: 149 ---NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 36.3 bits (80), Expect = 0.006
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA-----ERQKELKRKFE 167
G SRGFGFV+F + A+ A E+NGK V + + A K A + + K E
Sbjct: 186 GRSRGFGFVSFRNQQDAQTAINEMNGK-WVSSRQIRCNWATKGATFGEDKHSSDGKSVVE 244
Query: 168 ----------QLKSERL--TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 311
+L +E Q +YV NL + L + F G +V ++
Sbjct: 245 LTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ- 303
Query: 312 GRXKGFGFVCFSS 350
R KGFGFV +++
Sbjct: 304 -RDKGFGFVRYNT 315
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 43.2 bits (97), Expect = 5e-05
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S G+GFV FE D A++ E NG + + + +K L+ L
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDL--- 197
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRXKGFGFVCF 344
+++V +L + D L + F+ + ++ +AKV+L+ GR KG+GFV F
Sbjct: 198 --------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNG 80
G S+G+GFV F D + +A E+NG
Sbjct: 236 GRSKGYGFVRFGDENERTKAMTEMNG 261
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
G NL++ N+ +D+ L F PFG + SAKV ++ G K FGF+ + S
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 389
Score = 32.3 bits (70), Expect = 0.093
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 161
G S+ FGF++++ AA+ A +NG +L GK L V + ++Q++ + K
Sbjct: 377 GISKCFGFISYDSQAAAQNAINTMNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 428
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 143
S+G F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 148 SKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 194
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 43.2 bits (97), Expect = 5e-05
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
G NL++ N+ +D+ L F PFG + SAKV ++ G K FGF+ + S
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 380
Score = 32.3 bits (70), Expect = 0.093
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 161
G S+ FGF++++ AA+ A +NG +L GK L V + ++Q++ + K
Sbjct: 368 GISKCFGFISYDSQAAAQNAINTMNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 419
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQ 143
S+G F+ +E + A A LNG+ ++EG PL V A + ERQ
Sbjct: 139 SKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 185
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.7 bits (96), Expect = 7e-05
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S+G G++ F D + A I L+G +L G+P+ V K +E +K L +
Sbjct: 208 SKGVGYIEFYDVMSVPMA-IALSG-QLFLGQPVMV----KPSEAEKNLAQSNSTTVGG-- 259
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCF 344
T LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F
Sbjct: 260 TGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
G +GFGF+ F + ++ A I LNGK + G+ + V
Sbjct: 303 GQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 42.7 bits (96), Expect = 7e-05
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL--- 173
G S+G+GFV F D + RA E+NG + + VG A K + + + +
Sbjct: 241 GRSKGYGFVRFGDENERSRALTEMNG-AYCSNRQMRVGIATPKRAIANQQQHSSQAVILA 299
Query: 174 -----------KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRX 320
S+ ++V +D + DE LR+ F+ FG + S K+ +
Sbjct: 300 GGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----G 355
Query: 321 KGFGFVCFS 347
KG GFV F+
Sbjct: 356 KGCGFVQFA 364
Score = 33.1 bits (72), Expect = 0.053
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEG-KPLYVGRAQKKAERQKELKRKFEQLKSER 185
S G+GFV F AAE +G + +P + A F +
Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWAS------------FSTGEKRA 195
Query: 186 LTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRXKGFGFVCF 344
+ ++++V +L + D L + F+ + ++ SAKV+++ GR KG+GFV F
Sbjct: 196 VENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
RY LY+ L D+ L+ F+ F +T A+VM GR +G+GFV F S
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFIS 81
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL 89
G SRG+GFV F D+A A +NG+EL
Sbjct: 69 GRSRGYGFVNFISEDSANSAISAMNGQEL 97
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 42.3 bits (95), Expect = 9e-05
Identities = 24/99 (24%), Positives = 43/99 (43%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F D RA E+NG + +P+ G A K + +
Sbjct: 212 GRSKGYGFVRFADESEQIRAMTEMNG-QYCSSRPMRTGPAANKKPLTMQPASYQNTQGNS 270
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 299
+ ++V +D ++ ++ L+ F FG + K+
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
Score = 33.1 bits (72), Expect = 0.053
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY-VGRAQKKAERQKELKRKFEQLKS 179
G S G+GF+ F + AER NG + + + + AQ A ++ Q +
Sbjct: 118 GYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERR-------QAEG 170
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRXKGFGFVCFS 347
T ++V +L + D L + F A + ++ AKV+ + GR KG+GFV F+
Sbjct: 171 PEHT------VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFA 223
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 42.3 bits (95), Expect = 9e-05
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK-- 176
G S+G+GFV F D + RA E+NG + + VG A K + + L
Sbjct: 252 GRSKGYGFVRFGDENERSRAMTEMNG-AFCSSRQMRVGIATPKRAAAYGQQNGSQALTLA 310
Query: 177 -----SERLTRYQGVN--LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGF 335
+ ++ + N ++V LD + +E L + F+ FG + S K+ + KG GF
Sbjct: 311 GGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGF 366
Query: 336 VCFSS 350
V F++
Sbjct: 367 VQFAN 371
Score = 32.7 bits (71), Expect = 0.071
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKSER 185
S G+GFV F AAE A +G + AE+ L F +
Sbjct: 159 SEGYGFVEFLSRSAAEEALQSFSGVTM------------PNAEQPFRLNWASFSTGEKRA 206
Query: 186 LTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRXKGFGFVCF 344
++++V +L + D L + FA + ++ AKV+++ GR KG+GFV F
Sbjct: 207 SENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
+G ++V L + D L + F+ FG I ++MLE GR +GFGF+ F+
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFA 56
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G SRGFGF+ F D A + + E++G++ + + + V RA+ K R
Sbjct: 45 GRSRGFGFITFADRRAMDESIREMHGRDFGD-RVISVNRAEPKLGR 89
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
+YV NL T D+ LR+ F+ +G + A VM + R +GFGFV +SS
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKEL 89
SRGFGFV + AE A ++GKEL
Sbjct: 43 SRGFGFVTYSSHSEAEAAVSGMDGKEL 69
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.9 bits (94), Expect = 1e-04
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 197
+GFV + D +A A + LNG+ L G+P+ V A +R+ + F
Sbjct: 93 YGFVHYFDRRSAGLAILSLNGRHLF-GQPIKVNWAYASGQRE-DTSSHF----------- 139
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
N++V +L + D L F+ + T + A+VM + GR +GFGFV F
Sbjct: 140 ---NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 36.3 bits (80), Expect = 0.006
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 17/133 (12%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA----ERQKELKRKFEQ 170
G SRGFGFV+F + A+ A E+ GK L + + A K A ++Q + +
Sbjct: 177 GRSRGFGFVSFRNQQDAQTAIDEITGKWL-GSRQIRCNWATKGATSGEDKQSSDSKSVVE 235
Query: 171 LKS-------------ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 311
L S Q +YV NL + L + F G +V ++
Sbjct: 236 LTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ- 294
Query: 312 GRXKGFGFVCFSS 350
R KGFGFV +S+
Sbjct: 295 -RDKGFGFVRYST 306
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
L++ + ++D++ LR+ F +G + +V+L E GR +GFGFV F+S
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTS 90
Score = 34.3 bits (75), Expect = 0.023
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F +AA A L+G++L G+ + V A +
Sbjct: 78 GRSRGFGFVTFTSSEAASSAIQALDGRDL-HGRVVKVNYANDR 119
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 40.7 bits (91), Expect = 3e-04
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 132 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 308
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 309 -DGRXKGFGFVCFSS 350
G KGFGFV +++
Sbjct: 92 VSGYSKGFGFVRYAT 106
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 40.7 bits (91), Expect = 3e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS 57
Score = 34.7 bits (76), Expect = 0.018
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 137
+GFGF+ F+ D A +A L+GK +V+G+ ++V A+ E
Sbjct: 48 KGFGFITFDSEDDARKALKSLDGK-IVDGRLIFVEVAKNAEE 88
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 40.3 bits (90), Expect = 4e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
S+GFGFV F D A++A +E NG++L G+ ++V A+ K
Sbjct: 74 SKGFGFVTFASADEAQKALMEFNGQQL-NGRTIFVDYAKAK 113
Score = 32.7 bits (71), Expect = 0.071
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +3
Query: 189 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
T+ +GV L++ L ++ L + F+ G + A+++++ R KGFGFV F+S
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
G LYV NL +DD L F G + A+V+ + GR KGFGFV SS
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 299
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR 158
G SRGFGFV E A + NG E EG+PL V +R++ R
Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEF-EGRPLRVNAGPPPPKREESFSR 187
Score = 34.3 bits (75), Expect = 0.023
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G S+GFGFV ++A LNG +L +G+ + V A+ + R
Sbjct: 287 GRSKGFGFVTLSSSQEVQKAINSLNGADL-DGRQIRVSEAEARPPR 331
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
ER + + L+V NL +D +L + F G + +V+ + GR +GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
G LYV NL +DD L F G + A+V+ + GR KGFGFV SS
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR 158
G SRGFGFV E A + NG E EG+PL V +R++ R
Sbjct: 137 GRSRGFGFVTMSTAAEVEAAAQQFNGYEF-EGRPLRVNAGPPPPKREESFSR 187
Score = 34.3 bits (75), Expect = 0.023
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
G S+GFGFV ++A LNG +L +G+ + V A+ + R
Sbjct: 295 GRSKGFGFVTLSSSQEVQKAINSLNGADL-DGRQIRVSEAEARPPR 339
Score = 33.9 bits (74), Expect = 0.031
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
ER + + L+V NL +D +L + F G + +V+ + GR +GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 40.3 bits (90), Expect = 4e-04
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA-----QKKAERQKELKRKFE 167
GNS+G+ F ++DP + AC LNG ++ + K L V RA Q K E+++ L +
Sbjct: 413 GNSKGYAFCVYQDPSVTDIACAALNGIKMGD-KTLTVRRAIQGAIQPKPEQEEVLLYAQQ 471
Query: 168 QLKSERL 188
Q+ +RL
Sbjct: 472 QIALQRL 478
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
+G NL++ N+ D+ L F FG + SAKV ++ G K FGFV + S
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDS 399
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 161
S+G F+ +E + A A +NGK +EG PL V A + ER +K
Sbjct: 145 SKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 113
G S+ FGFV+++ AA+ A +NG+ L GK L V
Sbjct: 387 GVSKCFGFVSYDSQAAAQNAIDMMNGRHL-GGKKLKV 422
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.9 bits (89), Expect = 5e-04
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
SRGFGFV + A+ A N + + G+ + V + + E+ R +++
Sbjct: 156 SRGFGFVTMGSIEEAKEAMQMFNSSQ-IGGRTVKVNFPEVPRGGENEVMRT--KIRDNNR 212
Query: 189 TRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
+ + +Y NL + + L+ F + AKV+ E GR +GFGF+ F S
Sbjct: 213 SYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFES 269
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGF++FE + + A +NG E VEG+ L + A ++
Sbjct: 257 GRSRGFGFISFESAENVQSALATMNGVE-VEGRALRLNLASER 298
Score = 34.7 bits (76), Expect = 0.018
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +3
Query: 111 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 290
V ++ E E + + E+ K + LYV NL TI L + F GT+
Sbjct: 85 VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 291 AKVMLE--DGRXKGFGFVCFSS 350
+++ + R +GFGFV S
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGS 166
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 39.9 bits (89), Expect = 5e-04
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
L+V L +E+L+ FA FG + A+V+ + GR KGFGFV +++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
Score = 34.7 bits (76), Expect = 0.018
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 143
G S+GFGFV + + AE+A E+N K ++G ++V A+ + R+
Sbjct: 72 GRSKGFGFVTYATIEDAEKAKAEMNAK-FLDGWVIFVDPARPREPRR 117
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 39.9 bits (89), Expect = 5e-04
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIE 71
G S+G+GFV F DP+AA RAC++
Sbjct: 62 GRSKGYGFVTFRDPEAARRACVD 84
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
++V L E LR+ F +G I A V+ + GR KG+GFV F
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+D A + A +NG++L +G+ + V AQ +
Sbjct: 46 GRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L DD L FA +G + +K++ E GR +GFGFV F
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGFGFV F+D A + A +NG++L +G+ + V AQ +
Sbjct: 46 GRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSITVNEAQSR 87
Score = 35.5 bits (78), Expect = 0.010
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L DD L FA +G + +K++ E GR +GFGFV F
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 125
G SRGFGF+ F++ A + A +NG +L +G+ + V +AQ
Sbjct: 45 GRSRGFGFITFDEKKAMDEAIAAMNGMDL-DGRTITVDKAQ 84
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
++ L T D LR F +G + AKV+L+ GR +GFGF+ F
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 39.1 bits (87), Expect = 8e-04
Identities = 18/49 (36%), Positives = 31/49 (63%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKE 149
G S G+GFV+F + AE A +LNGKE++ G+P+ + + + A ++
Sbjct: 233 GRSSGYGFVSFATREEAENAITKLNGKEIM-GRPITLKFSLRSASESED 280
Score = 34.3 bits (75), Expect = 0.023
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G +RGF FV + A+ A + + + V G+ + V A++ +K + L S
Sbjct: 132 GKNRGFAFVTMASGEEAQAAIDKFDTFQ-VSGRIISVSFARRF---KKPTPKSPNDLPSP 187
Query: 183 RL--TRYQGVNLYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRXKGFGFVCF 344
TR++ LYV NL LR+ F A F + SA+V+ D GR G+GFV F
Sbjct: 188 APGDTRHK---LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSF 243
Query: 345 SS 350
++
Sbjct: 244 AT 245
Score = 33.9 bits (74), Expect = 0.031
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 111 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 290
V + A+ + + K E+ ++ L R L+V NL ++ + + F GT+ +
Sbjct: 68 VAEKETSADEETSQEEKTEETQNSNLKR----KLFVFNLPWSMSVNDISELFGQCGTVNN 123
Query: 291 AKVMLE-DGRXKGFGFVCFSS 350
+++ + DG+ +GF FV +S
Sbjct: 124 VEIIRQKDGKNRGFAFVTMAS 144
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRGFG+V F + A+ A L G+ + + L V A K E ++ K
Sbjct: 41 GRSRGFGYVTFASAEDAKNA---LKGEHFLGNRILEVKVATPKEEMRQPAK--------- 88
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++TR ++V + ++ + R F +G IT + + + +G GF+ FSS
Sbjct: 89 KVTR-----IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSS 141
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.3 bits (85), Expect = 0.001
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 188
S G+GFV F+ + A +L G L +G L + + E ++ K + K +
Sbjct: 614 SSGYGFVEFDSVETATSVYRDLQGTVL-DGHALIL----RFCENKRSDKVGKDSNKDKPC 668
Query: 189 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCF 344
T+ L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F
Sbjct: 669 TK-----LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
N++V+ L E L+ F +G IT V+++ GR KGFGFV F +
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIE 71
G S+G+GFV F DP+AA RAC +
Sbjct: 62 GRSKGYGFVTFRDPEAARRACAD 84
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
++V L E LR+ F +G I A V+ + GR KG+GFV F
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 155
+GFGF+ FE D A++A LNGK +V G+ ++V A++ LK
Sbjct: 107 KGFGFITFESEDDAQKALKALNGK-IVNGRLIFVETAKEVEAPTTSLK 153
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 243 DERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
D+ LR+ FAPF + + + R KGFGF+ F S
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFES 116
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 159 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFG 332
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ R KG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 333 FVCFSS 350
F+ F+S
Sbjct: 85 FIQFTS 90
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
++V + + D+ LR+ F+ +G + AK+++ E GR +GF FV F+S
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTS 84
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G SRGF FV F + A A ++L+G++L G+ + V A ++
Sbjct: 72 GRSRGFAFVTFTSTEEASNA-MQLDGQDL-HGRRIRVNYATER 112
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 37.9 bits (84), Expect = 0.002
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Frame = +3
Query: 18 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 197
+GFV + D A A + LNG+ + G+P+ V A +R+ + F
Sbjct: 102 YGFVHYFDRRCASMAIMTLNGRHIF-GQPMKVNWAYATGQRE-DTSSHF----------- 148
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRXKGFGFVCF 344
N++V +L + D L F+ F + +S A+VM + GR +GFGFV F
Sbjct: 149 ---NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 36.3 bits (80), Expect = 0.006
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKA-----ERQKELKRKFE 167
G SRGFGFV+F + A+ A E+NGK V + + A K A + + K E
Sbjct: 190 GRSRGFGFVSFRNQQDAQTAINEMNGK-WVSSRQIRCNWATKGATFGEDKHSSDGKSVVE 248
Query: 168 ----------QLKSERL--TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 311
+L +E Q +YV NL + L + F G +V ++
Sbjct: 249 LTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ- 307
Query: 312 GRXKGFGFVCFSS 350
R KGFGFV +++
Sbjct: 308 -RDKGFGFVRYNT 319
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIE 71
G S+G+GFV F DP+AA++AC++
Sbjct: 45 GRSKGYGFVTFCDPEAAQKACVD 67
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 252 LRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
LR F FG I A V+ + GR KG+GFV F
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 37.9 bits (84), Expect = 0.002
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIE 71
G S+G+GFV F DP+AA++AC++
Sbjct: 45 GRSKGYGFVTFCDPEAAQKACVD 67
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 252 LRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
LR F FG I A V+ + GR KG+GFV F
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.002
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFSS 350
++V L + D E L++ F FG I A V+L E G +GFGFV + S
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL 89
G SRGFGFV ++ + A A + KEL
Sbjct: 74 GLSRGFGFVTYDSIEVANNAMQAMQNKEL 102
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
Y NLY+ L ++D+ L F+ FG I AKV+ + G KG+GFV ++
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 128
G S+G+GFV + D A A +NG EG+ L V A K
Sbjct: 518 GLSKGYGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +3
Query: 195 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
Y NLY+ L ++D+ L F+ FG I AKV+ + G KG+GFV ++
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 128
G S+G+GFV + D A A +NG EG+ L V A K
Sbjct: 518 GLSKGYGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRXKGFGFVCF 344
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRXKGFGFVCF 344
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAF 238
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.002
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ-----KKAERQKELKRKFE 167
GNS+G+ F ++D + AC LNG ++ + K L V RA +K E++ L +
Sbjct: 397 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQ 455
Query: 168 QLKSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFV-C 341
Q+ +R+ G V V L + ++ LR + +G I +ED R +G F C
Sbjct: 456 QIAFQRVMLQPGAVATTVVCLTQVVTEDELRDD-EEYGDI------MEDMRQEGGKFAFC 508
Query: 342 F 344
+
Sbjct: 509 Y 509
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.1 bits (82), Expect = 0.003
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 15/131 (11%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNG---------------KELVEGKPLYVGRAQKKAE 137
G S+G+GFV F + RA E+NG K+ V + YV +A
Sbjct: 155 GRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVT 214
Query: 138 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 317
+ + + + + V NLD + +E L+K F+ G + K+
Sbjct: 215 VPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI----PA 270
Query: 318 XKGFGFVCFSS 350
KG+G+V F +
Sbjct: 271 TKGYGYVQFKT 281
Score = 29.1 bits (62), Expect = 0.87
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS- 179
G G+GF+ F AAER NG ++ G L + + S
Sbjct: 62 GQPEGYGFIEFISHAAAERTLQTYNGTQM-PGTEL-------------TFRLNWASFGSG 107
Query: 180 ERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRXKGFGFVCFS 347
+++ +++V +L + D L++ F + ++ AKV+ + GR KG+GFV F+
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFA 166
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 128
G SRGF F+ FE D+A RA + ++G+ L+ K L V R K
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGR-LIGQKILCVQRTPK 94
Score = 33.9 bits (74), Expect = 0.031
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
+LY+ NLD + +E L F+ FG + + V+ +D G +GF F+ F S
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFES 66
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 213 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRXKGFGFVCF 344
+V L +DE L++ F+ FG + +K++ E GR +GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
Score = 33.9 bits (74), Expect = 0.031
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNG 80
G SRGFGFV F+D A A E+NG
Sbjct: 44 GRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ-----KKAERQKELKRKFE 167
GNS+G+ F ++D + AC LNG ++ + K L V RA +K E++ L +
Sbjct: 397 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQ 455
Query: 168 QLKSERLTRYQG-VNLYVKNLDDTIDDERLRKE 263
Q+ +R+ G V V L + ++ LR +
Sbjct: 456 QIAFQRVMLQPGAVATTVVCLTQVVTEDELRDD 488
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ-----KKAERQKELKRKFE 167
GNS+G+ F ++D + AC LNG ++ + K L V RA +K E++ L +
Sbjct: 397 GNSKGYAFCVYQDLSVTDIACAALNGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQ 455
Query: 168 QLKSERLTRYQG-VNLYVKNLDDTIDDERLRKE 263
Q+ +R+ G V V L + ++ LR +
Sbjct: 456 QIAFQRVMLQPGAVATTVVCLTQVVTEDELRDD 488
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
L+ +L + ++D+ L K FA F T AKV+ + G+ KG+GFV F
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
Score = 33.1 bits (72), Expect = 0.053
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA-------QKKAERQKELKRK 161
G ++G+GFV+F +P A E+NGK V +P+ + ++ Q+ AERQK K
Sbjct: 175 GKTKGYGFVSFLNPADLAAALKEMNGK-YVGNRPIKLRKSSWKERTDQEAAERQKHHSNK 233
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFS 347
L++ L ++D++ L+ F+ FG + ++ + GR +GFGFV F+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFA 90
Score = 33.1 bits (72), Expect = 0.053
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G SRGFGFV F + A A ++GK L+ G+PL + A ++ + + + K E
Sbjct: 79 GRSRGFGFVDFAEEGDALSAKDAMDGKGLL-GRPLRISFALERVRGGPVVVPRLGKSKRE 137
Query: 183 R 185
R
Sbjct: 138 R 138
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK--KAERQKELKRKFEQLKSE 182
S G+GFV+F+ AE A IE GK+ + G+P+ + ++++ K + ++ L+ E+ + E
Sbjct: 230 SSGYGFVSFKTKKQAEAALIEFQGKDFL-GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEE 288
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G+S+G+ FVAF+ D A++A EL+ KE +GK + ++ K
Sbjct: 154 GDSKGYAFVAFKTKDVAQKAIEELHSKEF-KGKTIRCSLSETK 195
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
LYVKN+ + E+L++ F G +T G + FGFV ++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYA 339
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.5 bits (78), Expect = 0.010
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXK--GFGFVCF 344
LYV L D +++ L F PFG I K L+ K FGFV F
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 35.1 bits (77), Expect = 0.013
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G+ RGFGF+ F DP A A +++G L+ G+ L V A++ ++ E++ + +S
Sbjct: 75 GDPRGFGFIQFMDPADAAEAKHQMDG-YLLLGRELTVVFAEENRKKPTEMRTRDRGGRSN 133
Query: 183 R 185
R
Sbjct: 134 R 134
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
+G NL++ N+ D+ L F FG + SAKV ++ G K FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 161
S+G F+ +E + A A +NGK +EG PL V A + ER +K
Sbjct: 145 SKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 34.7 bits (76), Expect = 0.018
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
++V NL + LR+ F FG + A V+ E GR KG+GF+ F
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 101
G S+G+GF+ F D + RA N K +++G+
Sbjct: 50 GRSKGYGFITFRDYVSTVRAL--QNSKPIIDGR 80
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.018
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELN 77
G S+G+GFV F++ +AA RAC +N
Sbjct: 60 GRSKGYGFVTFKEAEAAMRACQNMN 84
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
++V L + +R+ F FG I A V+ + GR KG+GFV F
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G RGFGF+ F D A+ A ++G+EL K + V +A+ K
Sbjct: 50 GRPRGFGFITFTDRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRXKGFGFVCFS 347
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 131
G RGFGF+ F D A+ A ++G+EL K + V +A+ K
Sbjct: 50 GRPRGFGFITFTDRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.023
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 93 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 209
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 33.9 bits (74), Expect = 0.031
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
N++V+ E L+ F +G I V+++ GR KG+GFV F +
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 33.5 bits (73), Expect = 0.040
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 177 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
S+ +R+ ++ V NL + L + F PFG +T V ++ +GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNG 80
SRGFGFV+F + A+RA +LNG
Sbjct: 214 SRGFGFVSFVSREDAQRAINKLNG 237
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 33.5 bits (73), Expect = 0.040
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVE 95
G S+ FGF+ FEDP+ AE A +N L+E
Sbjct: 98 GKSKHFGFIQFEDPEVAEIAAGAMNDYLLME 128
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.5 bits (73), Expect = 0.040
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR--AQKKAERQKELKRK 161
G S+GF F+A+ED + A LNG LV G+ + V A KK E + E R+
Sbjct: 74 GKSKGFAFLAYEDQRSTILAVDNLNG-ALVLGRTIKVDHCGAYKKHEEEDEETRR 127
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKEL 89
G S+GF FV F+D D+ A +NG+EL
Sbjct: 82 GRSKGFRFVTFKDEDSMRTAIDRMNGQEL 110
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.5 bits (73), Expect = 0.040
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G S+G+GFV F + +AA AC++ +++G+ A +R K
Sbjct: 51 GRSKGYGFVTFREAEAARSACVD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 ERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
E ++K F FG I A V+ + GR KG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.5 bits (73), Expect = 0.040
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G S+G+GFV F + +AA AC++ +++G+ A +R K
Sbjct: 51 GRSKGYGFVTFREAEAARSACVD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 ERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
E ++K F FG I A V+ + GR KG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.5 bits (73), Expect = 0.040
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G S+G+GFV F + +AA AC++ +++G+ A +R K
Sbjct: 51 GRSKGYGFVTFREAEAARSACVD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +3
Query: 246 ERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
E ++K F FG I A V+ + GR KG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.053
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE--------RQKELKR 158
G G GFV F + AE A + NG E ++ +++ A KKA K +
Sbjct: 164 GKLVGCGFVEFASVNEAEEALQKKNG-ECLDNNKIFLDVANKKATYLPPKYCIDHKVWDK 222
Query: 159 KFEQLKS------ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGR 317
+ +L+S ER L+V NL + F G + S ++M+ +G+
Sbjct: 223 DYRRLESHPIEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGK 282
Query: 318 XKGFGFVCFSS 350
G+GFV F+S
Sbjct: 283 HVGYGFVEFAS 293
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.1 bits (72), Expect = 0.053
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 161
G+ RGFGFV F DP A A ++G L+ G+ L V A++ ++ E++ +
Sbjct: 74 GDPRGFGFVQFMDPADAADAKHHMDG-YLLLGRELTVVFAEENRKKPTEMRAR 125
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCF 344
+L V+NL E LRK F FG + + + G +GFGFV F
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.7 bits (71), Expect = 0.071
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +3
Query: 198 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKG--FGFVCF 344
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEF 367
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 32.3 bits (70), Expect = 0.093
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
GV L+V L +++ + L K F+P GT+ + + + GR F ++ FS
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGR--SFAYIDFS 55
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.3 bits (70), Expect = 0.093
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGK 101
+GF +V F + AE+A +ELN +LV+G+
Sbjct: 62 KGFAYVTFSSKEEAEKALLELNA-QLVDGR 90
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.093
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELN 77
G S+G+GFV F D D+A RA + N
Sbjct: 55 GKSKGYGFVTFRDSDSATRAVADPN 79
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 231 DTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
+T DE +R+ F FG I A ++ + G+ KG+GFV F
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G+SRGF FV ++ D A +A L+G+ +V+G+ + V A+ +K
Sbjct: 54 GDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQFAKYGPNAEK 100
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 146
G+SRGF FV ++ D A +A L+G+ +V+G+ + V A+ +K
Sbjct: 54 GDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQFAKYGPNAEK 100
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK 101
S+G+GFV F+D ++A RAC + N +EG+
Sbjct: 53 SQGYGFVTFKDAESATRACKDPN--PTIEGR 81
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNG 80
G SRGFGFV F + A+RA +LNG
Sbjct: 251 GVSRGFGFVNFVSREDAQRAINKLNG 276
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 222 NLDDTIDDERLRKEFAPFGTITSAKVMLEDG 314
N ++D R+ KE+AP GT+T VML G
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCG 281
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RXKGFGFVCF 344
+YV L E L F FG I AKV+ + R KGFGFV F
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
Score = 29.9 bits (64), Expect = 0.50
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERAC 65
S+GFGFV F + ++A RAC
Sbjct: 49 SKGFGFVTFREVESATRAC 67
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.1 bits (67), Expect = 0.22
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCF 344
++YV N+D E +++ F GT+ ++ + G+ KGF +V F
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERAC 65
S+G+GFV F+D AA RAC
Sbjct: 57 SKGYGFVTFKDAKAATRAC 75
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFS 347
G LY+ NLD + +E +++ FA G + V + GR KG V +S
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 134
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFS 347
G LY+ NLD + +E +++ FA G + V + GR KG V +S
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 70
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFS 347
G LY+ NLD + +E +++ FA G + V + GR KG V +S
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 136
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCF 344
++YV N+D E ++ F GT+ ++++ G+ KGF +V F
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 30.7 bits (66), Expect = 0.29
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRXKGFGFVCF 344
++YV N+D E ++ F GT+ ++++ G+ KGF +V F
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.7 bits (66), Expect = 0.29
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRXKGFGFVCFS 347
G LY+ NLD + +E +++ F+ G + + + GR KG V FS
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFS 156
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 164
S+G+ F+ + +AA A E+NGK ++ G + V A+ K RQ + F
Sbjct: 322 SKGYAFLEYTTEEAAGTALKEMNGK-IINGWMIVVDVAKTKPFRQNRSQPSF 372
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELN 77
G S+G+GFV F + D+A RA + N
Sbjct: 55 GKSKGYGFVTFRESDSATRAVADPN 79
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 231 DTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
+T DE +R+ F FG I A ++ + G+ KG+GFV F
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELN 77
G S+G+GFV F + D+A RA + N
Sbjct: 55 GKSKGYGFVTFRESDSATRAVADPN 79
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 231 DTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCF 344
+T DE +R+ F FG I A ++ + G+ KG+GFV F
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
GN +G +A+EDP AA A N E+ G + V A+K A R
Sbjct: 331 GNYKGDACLAYEDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
GN +G +A+EDP AA A N E+ G + V A+K A R
Sbjct: 331 GNYKGDACLAYEDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 30.3 bits (65), Expect = 0.38
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 302
++ AER +++ + + E L + ++V L + L F +G I K +
Sbjct: 104 KEAAERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
Query: 303 LE--DGRXKGFGFVCFSS 350
++ G+ KG+GF+ F S
Sbjct: 161 VDKVSGQSKGYGFILFKS 178
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 317
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.9 bits (64), Expect = 0.50
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+YV NLD + + L EF FG I S V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDF 45
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.5 bits (63), Expect = 0.66
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+YV NLD + + L EF FG + S V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDF 45
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--XKGFGFVCFSS 350
L V+ LD+ D+E LR EF+ I +++ + +GF FV F S
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYS 508
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLT 191
+ FGFV F+ +AA +N EL EG+ RA+ QK K + + +S++ +
Sbjct: 432 KDFGFVTFDTHEAAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGR-QSSRSDQRS 490
Query: 192 RY 197
R+
Sbjct: 491 RH 492
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITS 290
L+V+N++ +++D L F PFG I S
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS 213
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITS 290
L+V+N++ +++D L F PFG I S
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS 226
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 117 RAQKKAERQKELKRKFEQLKSERL 188
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 192 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
R G ++Y+K L L EF FG I + + + + FGFV F S
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFES 360
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 140
SRGFGF++ + A R CI +++G+ + V +A+++ R
Sbjct: 115 SRGFGFISMKSVGDANR-CIRSLDHSVLQGRVITVEKARRRRGR 157
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKG--FGFVCFSS 350
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +3
Query: 45 DAAERACI----ELNGKELVEGKPLYV 113
+ E AC+ EL G+E +EGKPLYV
Sbjct: 151 EVIECACVIELPELKGRERLEGKPLYV 177
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 167
G SR FGFV FE+ + A + ++ +E K + VG + RQ+ R E
Sbjct: 45 GKSRRFGFVTFEEEKSMTDAIMIMDVEE-SRSKCVNVGSITVEVARQRRKNRSAE 98
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/50 (24%), Positives = 30/50 (60%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 161
+GF F+ +E + A +A ++GK ++G+ ++V A+ +++ + R+
Sbjct: 118 KGFAFLRYETEEEAMKAIQGMHGK-FLDGRVIFVEEAKTRSDMSRAKPRR 166
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
LYV L ++ LR F FG + ++++ R KGF F+ + +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 81 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 209
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 155
G RGFGFV + + A A +N K ++ G+ + + A++ + +E++
Sbjct: 85 GEPRGFGFVKYRYAEDAAEAMKRMNHK-VIGGREIAIVFAEENRKTPQEMR 134
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 120 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 299
+Q+ +R + E + E L+R L+V+N+D +I+D L F FG + +
Sbjct: 187 SQRDGKRGSNVSTVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RA 239
Query: 300 MLEDGRXKGFGFVCF 344
+ G+ +GF V +
Sbjct: 240 LHTAGKNRGFIMVSY 254
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L E L + F +G I K + + G+ KG+GF+ + S
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L E L + F +G I K + + G+ KG+GF+ + S
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
++V L E L + F +G I K + + G+ KG+GF+ + S
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 305
++YV+NL I + +EF FGTI V L
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFL 290
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 207 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 305
++YV+NL I + +EF FGTI V L
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFL 349
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/64 (28%), Positives = 37/64 (57%)
Frame = +3
Query: 54 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 233
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 234 TIDD 245
+ D
Sbjct: 485 QVMD 488
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 81 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 221
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 149
SRG GFV + + A A LNG + G +PL V A+ K + E
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 149
SRG GFV + + A A LNG + G +PL V A+ K + E
Sbjct: 250 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 149
SRG GFV + + A A LNG + G +PL V A+ K + E
Sbjct: 8 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 56
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 87 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 185
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM 302
L+V L+ +DE L F+ FGT+ SA V+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
+YV ++D + +E+L F FG + ++ + F F+ F+
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFT 197
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 117 RAQKKAERQKELKR---KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 272
+ +KKA+R KE K+ K +Q K + Q + + DDT++++ +E P
Sbjct: 133 KKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPP 187
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+YV NLD + + L EF FG + + V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+YV NLD + + L EF FG + + V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEF 45
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 84 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 263
E+++ K + + + +KE +F+ L+ ERL + + L V+ + + +DD RL++E
Sbjct: 559 EILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESA-LRVQIMQE-LDDIRLQRE 616
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 69 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 161
+L G+E G P VGR+ + R ++L R+
Sbjct: 452 DLEGQESQRGSPASVGRSSRGTPRNRDLDRE 482
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/114 (23%), Positives = 45/114 (39%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F D A A E + K ++G+ V Q A + + +
Sbjct: 113 GKSKGYGFVTFMHVDGALLALKEPSKK--IDGR---VTVTQLAASGNQGTGSQIADISMR 167
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+ +YV N+ + +RL F +G + + + K GF F
Sbjct: 168 K--------IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.1 bits (57), Expect = 3.5
Identities = 27/114 (23%), Positives = 45/114 (39%)
Frame = +3
Query: 3 GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE 182
G S+G+GFV F D A A E + K ++G+ V Q A + + +
Sbjct: 113 GKSKGYGFVTFMHVDGALLALKEPSKK--IDGR---VTVTQLAASGNQGTGSQIADISMR 167
Query: 183 RLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
+ +YV N+ + +RL F +G + + + K GF F
Sbjct: 168 K--------IYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 27.1 bits (57), Expect = 3.5
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKELKRKF 164
RG+ FV F + A A LNG + G +PL V A K R E + F
Sbjct: 247 RGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKKPRLGEQRSTF 299
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCF 344
LYV+NL I E + F +G I ++ D KG FV +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVY 64
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRXKGFGFVCFSS 350
LYV NLD ++ + + F+ FG + V+ + + +G FV + S
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVS 107
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
++V L E L F +G I V+++ G+ KGFGFV F +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRXKGFGFVCFSS 350
++V L E L F +G I V+++ G+ KGFGFV F +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
+YV ++D ++ +E L F+ G + ++ + F FV FS
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFS 175
>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
identical to HDA18 [Arabidopsis thaliana] GI:21105769;
similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 682
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +3
Query: 48 AAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNL 227
+AER + +E+ E K L R + R+KELK K ++L++ G+ L ++
Sbjct: 430 SAERNSADALLREVEELKSLMAARDGELEARRKELKAKNKELEANEKELEAGLML-IRAR 488
Query: 228 DDTI 239
+D I
Sbjct: 489 EDVI 492
>At3g53860.1 68416.m05950 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 281
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 118 RPT*RGLPSTSSLPFNSMQALSAASGSSKATKPKPL 11
+P+ LPSTS+ P +Q + SS T+P+ L
Sbjct: 45 KPSTNVLPSTSNSPITMLQEDEILASSSHLTRPELL 80
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/89 (16%), Positives = 39/89 (43%)
Frame = +3
Query: 84 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 263
+L +G + R + + ++ + ++ + + + R +YV ++D + +E L
Sbjct: 132 KLADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRR---TVYVSDIDQQVTEENLAGV 188
Query: 264 FAPFGTITSAKVMLEDGRXKGFGFVCFSS 350
F G + +V + F F+ F++
Sbjct: 189 FINCGQVVDCRVCGDPNSVLRFAFIEFTN 217
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 123 QKKAERQKELKRKFEQLKSERLTRYQ 200
+KK E ++E K+K E+ + ER Y+
Sbjct: 249 EKKKEEERERKKKMEKERLERAMNYE 274
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +3
Query: 117 RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRK 260
R ++ ER+KE +R++E+ K + R + + + ++ DD+ R+
Sbjct: 482 RQWERREREKEKERQYEKEKEKEKERKRKKEIRYEEEEEEDDDDSRRR 529
>At1g49190.1 68414.m05515 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
;contains similarity to two-component response regulator
protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
Length = 608
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -3
Query: 252 DVHHQLYHPSS*HTN*HLDNELGVQISVVQ------TYASTPFDVQ 133
D HHQ H SS N ++NE +Q S + TY S P+D Q
Sbjct: 553 DHHHQQQHQSSPQFNYLMNNEELLQASGLSATDLELTYPSLPYDPQ 598
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 90 VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTR 194
+EG P R +K +KE KRK + KS R R
Sbjct: 861 LEGAPSNKKRTRKSRSGRKESKRKSSKSKSSRPRR 895
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Frame = +3
Query: 12 RGFGFVAFEDPDAAERAC----IELNGKELVEGK 101
RGFGF++++ +A ++ ELNGK +VE K
Sbjct: 74 RGFGFISYDSEEAVDKVLQKTFHELNGK-MVEVK 106
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRXKGFGFVCFS 347
LY+KNL I ERL+ F G I AK ED R +GFV ++
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYA 83
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK 101
SRGF FV AER CI+ + ++EG+
Sbjct: 112 SRGFAFVTMSSLKDAER-CIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 9 SRGFGFVAFEDPDAAERACIELNGKELVEGK 101
SRGF FV AER CI+ + ++EG+
Sbjct: 111 SRGFAFVTMSSLKDAER-CIKYLNQSVLEGR 140
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRXKGFGFVCFS 347
LY+KNL I ERL+ F G I AK ED R +GFV ++
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYA 317
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 15 GFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 125
G+GFV F P A A + NG+ L + K +++G A+
Sbjct: 723 GYGFVEFASPCLANMALEKKNGEYLHDHK-IFLGVAK 758
>At3g04550.1 68416.m00483 expressed protein
Length = 449
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +3
Query: 126 KKAERQKELKRKFEQLKSERL 188
K+AE++KE K+K E++K+ R+
Sbjct: 268 KEAEKEKEKKKKEEEVKAIRI 288
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 30 AFEDPDAAERACIELNGKELVEGKPLYVG 116
A +DPD A A ++LNG ++ P +G
Sbjct: 101 ALDDPDVAVVAGVDLNGADIAGHLPAELG 129
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 210 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRXKGFGFVCFS 347
+YV +LD + +E+L F G + ++ + F F+ F+
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFT 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,973,251
Number of Sequences: 28952
Number of extensions: 97367
Number of successful extensions: 837
Number of sequences better than 10.0: 197
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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