Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30260
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.18
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 28 0.95
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 27 2.2
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 26 3.8
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 5.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 5.1
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 8.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 8.9
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 8.9
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
+PL S + TA + P+T +++ST + A +TP ++ NS +SV +T
Sbjct: 357 TPLTSVNSTTATSASSTPLT-SVNSTSATSASSTPLTSANSTTSTSVSST 405
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
+PL S + TA + P+T +++ST + A +TP ++ NS +SV +T
Sbjct: 471 TPLTSVNSTTATSASSTPLT-SVNSTSATSASSTPLTSANSTTSTSVSST 519
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
+PL S + TA + P+T +++ST + A +TP ++ NS + +S +T
Sbjct: 341 TPLSSVNSTTATSASSTPLT-SVNSTTATSASSTPLTSVNSTSATSASST 389
Score = 28.7 bits (61), Expect = 0.55
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
+PL S + TA + P+T +++ST + A +TP ++ NS + +S +T
Sbjct: 455 TPLSSVNSTTATSASSTPLT-SVNSTTATSASSTPLTSVNSTSATSASST 503
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
+PL S + TA + P+T +++ST T+ A +TP S+ +S ++ +T
Sbjct: 290 TPLSSANSTTATSASSTPLT-SVNSTTTTSASSTPLSSVSSANSTTATST 338
Score = 27.9 bits (59), Expect = 0.95
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPA-SANNSLAHSSVRAT 203
+PL S + +A + P+T A +T TS + T P+ + ++ L SSV +T
Sbjct: 373 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSST 423
Score = 27.9 bits (59), Expect = 0.95
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPA-SANNSLAHSSVRAT 203
+PL S + +A + P+T A +T TS + T P+ + ++ L SSV +T
Sbjct: 487 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSST 537
Score = 24.6 bits (51), Expect = 8.9
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = -3
Query: 496 AFSANLFKAGASSV*KRISLVSNWASATNSLPNXXXXXXXXXXXRDFCSPLHS*RTVTAR 317
A S++L AS+ SL S S+ NS + +PL S + TA
Sbjct: 208 ATSSSLSSTAASNSATSSSLAS---SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAA 264
Query: 316 TLLRAPVTPALDSTRTSFAPTTPASANNSLAHSS 215
T A + A +T + +TP+S S A+S+
Sbjct: 265 TSASATSSSAQYNTSSLLPSSTPSSTPLSSANST 298
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 0.95
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 152 GSLRHCCTIYSSSLHLIYYF----CMH*RKFTTMVKHRTLRFSLLSNISINH 9
G LR C + Y LH IYYF + KF + + R L+ +IS+N+
Sbjct: 29 GLLRICRSSYVGGLHAIYYFPKLNPRNYHKFVDTISRKPTR-KLVHHISLNN 79
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 102 DQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARE 233
D ++ + ++A PSSG + +G DP AL +EW E
Sbjct: 170 DPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAAL-QEWVSE 212
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 230 SGPFFS*GNVIGIGPLFTLRILASTAGSLRHC-CTIYSSSLHLIYYF---CMH 84
S PFF + + P +++ S L H C+IYS +LH ++F C H
Sbjct: 24 SVPFF----FLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYH 72
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 355 CSPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSV 212
C L S R+++ R + P+ P L +F+ +TPAS S SSV
Sbjct: 435 CVQLPSIRSLSLRPS-QVPLIPPLKCDPNAFSASTPASGAVSRTPSSV 481
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = -2
Query: 233 FSGPFF-S*GNVIGIGP-----LFTLRILASTAGSLRHCCTIYSSSLHLIYYF 93
F G F S GN I + P L+ L I S A + + CC YS + IY+F
Sbjct: 303 FKGIFMQSFGNTIRLAPYTYDTLYPL-IQTSAAAAAKQCCGGYSGTSCGIYWF 354
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -3
Query: 352 SPLHS*RTVTARTLLRAPVTPALDSTRTSFAPTTPASANNSLAHSSVR 209
+P + + TA P T +TRT+ PT + +N +S R
Sbjct: 136 APAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTR 183
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 87 HTEII-DQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEE 221
H EI D + + A +E PS+ S+++ Q P D+ + EE
Sbjct: 247 HPEIYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSDNASNPEE 292
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 425 PIRHERNPFLHRTS 466
PI+H R+P LH T+
Sbjct: 1302 PIKHSRSPILHSTA 1315
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 219 EWARELLADAGVVGANEVRVESRAGVTGALSRVLAVTVRYECSGEQKSLPVVVKLPPRDP 398
E + ++ AD +G V V S AGV L + V E + +PVV PP+
Sbjct: 171 ENSMDISADLIELGRTRVAVVS-AGVKSILDIGRTLEVL-----ETQGVPVVTLGPPKSA 224
Query: 399 FGRLFVAEAQFDT 437
F F E++F +
Sbjct: 225 FPAFFSRESKFQS 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,728
Number of Sequences: 5004
Number of extensions: 37291
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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