Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30260
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118 29 1.7
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 2.2
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031... 28 5.1
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 5.1
09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427 27 6.8
07_03_0889 - 22316945-22317062,22317149-22318794 27 6.8
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 27 6.8
04_04_1328 - 32682087-32682200,32682290-32682365,32682442-326826... 27 6.8
08_02_1271 - 25762750-25764276 27 8.9
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 27 8.9
06_01_0808 + 6097751-6097913,6098298-6098731 27 8.9
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 8.9
>03_01_0385 - 2988117-2988429,2988566-2988887,2988977-2989118
Length = 258
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 138 MSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGVVG 260
+S SGS S +GP+ D + L+ W + AG+VG
Sbjct: 179 ISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVG 219
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 174 ECEQGPDPDDVALTEEWARELLADAGVVGANEVRVESRAGVTGALSRVLAVT 329
EC GP+ D + TE+ L + +V +E+ + G S+VL +T
Sbjct: 637 ECMIGPEGDLLETTEKQCNRLALEGPLVSIDEMEAIKKMNYRGWRSKVLDIT 688
>05_07_0059 +
27402365-27402733,27402848-27402982,27403070-27403183,
27403297-27403449,27403544-27403644,27403945-27404041,
27404542-27404651,27404775-27404878,27405129-27405308,
27405398-27405741,27405841-27405905,27405981-27406450,
27406939-27407793,27408045-27408116,27408475-27408575,
27409069-27409170,27409295-27409456,27409665-27411230,
27411384-27411602,27413924-27414198,27414291-27414596,
27414727-27415012,27415085-27415087,27415162-27415416,
27415537-27415803
Length = 2236
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 174 ECEQGPDPDDVALTEEWARELLADAGVVGANEVRVESRAGVTGALSRVLAVT 329
EC GP+ D TE L + ++ NE+ + G S+VL +T
Sbjct: 659 ECMIGPEGDLSETTERQCHRLTLKSPLLNTNEMEAIKKMNYRGWRSKVLDIT 710
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 135 AMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAG 251
A +E ++GS D E E DPDD L E RE D G
Sbjct: 31 AEAEAETAGSGDDE-EYVSDPDDALLPEMRRREASDDEG 68
>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
Length = 233
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 78 SSVHTEIIDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTE 218
S H E I +++ +S + SE +S S DS E P+P + + E
Sbjct: 96 SFAHCETIIEIEDTHEESTSESEYATSISHDSNVESSPEPREPKVIE 142
>07_03_0889 - 22316945-22317062,22317149-22318794
Length = 587
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +3
Query: 246 AGVVGANEVRVESRAGVTGALSRVLAVTVRYECSGEQKSLPVVVKLPPRDPFGRLFVAEA 425
AG + A RV+ +GAL+R A+ V C+G + V+ RD F RL V A
Sbjct: 115 AGTLDALVARVDE-VYASGALTRARALVVSRPCAGASRD---DVRFYVRDLFARLRVGGA 170
Query: 426 Q 428
+
Sbjct: 171 E 171
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 114 AGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGVVG 260
AGG ++A + T S E + + PDP+ AL + +EL+A A G
Sbjct: 58 AGGDEAAVIEGTGSFKEESNLVSELPDPERTALAQ--LKELVAAALAAG 104
>04_04_1328 -
32682087-32682200,32682290-32682365,32682442-32682698,
32682788-32682886,32682965-32683163,32683247-32683460,
32683615-32683683,32683772-32684096,32684211-32684381,
32684461-32684625,32684701-32684814,32685228-32685336,
32685403-32685464,32685726-32685797,32686401-32686436,
32686506-32686634
Length = 736
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 85 TDENLPQW*NTEHCGFHYFRILV 17
T EN+P+ N + CGF+ F +V
Sbjct: 664 TVENIPEQQNRDDCGFYVFNFMV 686
>08_02_1271 - 25762750-25764276
Length = 508
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 135 AMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGVVGANEVR 275
A+++ P +G E + + DPD + + EW+ ++L AG G N R
Sbjct: 416 AIAKFPKAG-EFMKVKDAYDPDGL-FSSEWSDQVLGVAGAGGVNVAR 460
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 79 ENLPQW*NTEHCGFHYFRILV 17
EN+P+ N + CGFH F +V
Sbjct: 779 ENIPKQQNGDDCGFHVFNNMV 799
>06_01_0808 + 6097751-6097913,6098298-6098731
Length = 198
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 331 TVTARTLLRAPVTPALDSTRTSFAPTTPAS 242
+ T T P TPA T + PTTPA+
Sbjct: 133 STTPTTPSTTPATPASPGTSSGLTPTTPAT 162
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 85 TDENLPQW*NTEHCGFHYFRILV 17
T EN+P+ N + CGF+ F +V
Sbjct: 802 TVENIPEQQNGDDCGFYVFNFMV 824
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,415
Number of Sequences: 37544
Number of extensions: 276367
Number of successful extensions: 789
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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