Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30260
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 32   0.24 
SB_22006| Best HMM Match : DUF1489 (HMM E-Value=6.4)                   32   0.24 
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   1.3  
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)                 27   6.9  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +3

Query: 210 LTEEWARELLADAGVVGANEVRV--ESRAGVTGALSRVLAVTVRYECSGEQKSLPVVVKL 383
           LT  W +++   AGVV A+ +++  E +A +   +++   +   +     +K  P+V  +
Sbjct: 245 LTYAW-KKVNTQAGVVAAHLLKIQPEFKADLLDGVTKFKVLVQNFVEDYTEKG-PMVPGI 302

Query: 384 PPRDPFGRLFVAEAQFD 434
           PPR+   RL + +A+FD
Sbjct: 303 PPREASDRLAIFQARFD 319


>SB_22006| Best HMM Match : DUF1489 (HMM E-Value=6.4)
          Length = 276

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
 Frame = +3

Query: 210 LTEEWARELLADAGVVGANEVRV--ESRAGVTGALSRVLAVTVRYECSGEQKSLPVVVKL 383
           LT  W +++   AGVV A+ +++  E +A +   +++   +   +     +K  P+V  +
Sbjct: 46  LTYAW-KKVNTQAGVVAAHLLKIQPEFKADLLDGVTKFKVLVQNFVEDYTEKG-PMVPGI 103

Query: 384 PPRDPFGRLFVAEAQFD 434
           PPR+   RL + +A+FD
Sbjct: 104 PPREASDRLAIFQARFD 120


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 180  EQGPDPDDVALTEEWARELLADA 248
            EQGP+PDD +L E+  RE   D+
Sbjct: 2685 EQGPNPDDESLIEKMIREAFQDS 2707


>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 301 PVTPALDSTRTSFAPTTPASANNSLAHSSVR 209
           P  P ++STR  +  +TP S N++L   +++
Sbjct: 412 PTRPQIESTRPQYVMSTPHSDNSNLLPQNIK 442


>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
          Length = 452

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -1

Query: 432 RIGLQPRTVFRTDPAGVV*RLRAGIFVHHCTHSVL*QLGPCSGLQL 295
           RI L PR    T+           IF+H+ TH  +     CSGL L
Sbjct: 222 RINLNPRVFTETEIQVFGRNSHTEIFLHNITHEEMKYYALCSGLVL 267


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 331 TVTARTLLRAP-VTPALDSTRTSFAPTTPASANNSLAHSSVRAT 203
           T TA  +  AP  T A  +T  S A T P +A  SLA ++  AT
Sbjct: 595 TTTASLVTTAPEATTASLATTASLATTAPETATASLATTAPEAT 638


>SB_48594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 99  IDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDD 203
           ID    GGID AA  +T  +   D+      D DD
Sbjct: 247 IDDAAPGGIDDAAAGDTDDADPSDTPDADPSDKDD 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,976
Number of Sequences: 59808
Number of extensions: 308481
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)