Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30260
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.1
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 6.0
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 27 8.0
U23528-4|ABC71848.1| 160|Caenorhabditis elegans Calsyntenin/alc... 27 8.0
U23528-3|AAK31388.1| 167|Caenorhabditis elegans Calsyntenin/alc... 27 8.0
U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alc... 27 8.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 27 8.0
AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin p... 27 8.0
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 29.9 bits (64), Expect = 1.1
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +3
Query: 195 PDDVALTEEW-ARELLADAGVV--GANE-VRVESRAGVTGALSRVLAVTVRYECSGEQKS 362
P V ++E A LAD VV A+E V + + + A+ LAVT+ C +
Sbjct: 209 PGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTL---CISKIDR 265
Query: 363 LPVVVKLPPRDPFGRLFVAEAQFDTREILFYTELAPALNKLAENAL 500
L + +KLPP D + +L + Q + F E P L+ L N +
Sbjct: 266 LLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVPVLSPLNGNVI 311
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 29.9 bits (64), Expect = 1.1
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +3
Query: 195 PDDVALTEEW-ARELLADAGVV--GANE-VRVESRAGVTGALSRVLAVTVRYECSGEQKS 362
P V ++E A LAD VV A+E V + + + A+ LAVT+ C +
Sbjct: 84 PGHVNFSDEMTASYRLADGVVVMVDAHEGVMMNTERAIRHAIQERLAVTL---CISKIDR 140
Query: 363 LPVVVKLPPRDPFGRLFVAEAQFDTREILFYTELAPALNKLAENAL 500
L + +KLPP D + +L + Q + F E P L+ L N +
Sbjct: 141 LLLELKLPPADAYFKLRLIIDQVNNILSTFAEEDVPVLSPLNGNVI 186
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 331 TVTARTLL--RAPVTPALDSTRTSFAPTTPASANNS 230
T T+ +L+ AP P +T +S APTTPA + +
Sbjct: 1988 TTTSESLILTAAPSKPTESTTESSEAPTTPAKTSET 2023
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 307 RAPVTPALDSTRTSFAPTTPASANNSLAHS 218
++PV+P+ T S++PT+P+ + S ++S
Sbjct: 1605 QSPVSPSYSPTSPSYSPTSPSYSPTSPSYS 1634
>U23528-4|ABC71848.1| 160|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform c
protein.
Length = 160
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 105 QMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELL----ADAGVVGANE 269
+ G ID + E +SEC + DDV+ EE E+L A+ VVG E
Sbjct: 86 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVLPHLDANQRVVGGLE 144
>U23528-3|AAK31388.1| 167|Caenorhabditis elegans
Calsyntenin/alcadein homolog protein1, isoform b
protein.
Length = 167
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 105 QMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELL----ADAGVVGANE 269
+ G ID + E +SEC + DDV+ EE E+L A+ VVG E
Sbjct: 93 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVLPHLDANQRVVGGLE 151
>U23528-2|AAK31387.1| 984|Caenorhabditis elegans Calsyntenin/alcadein
homolog protein1, isoform a protein.
Length = 984
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 105 QMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELL----ADAGVVGANE 269
+ G ID + E +SEC + DDV+ EE E+L A+ VVG E
Sbjct: 910 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVLPHLDANQRVVGGLE 968
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 307 RAPVTPALDSTRTSFAPTTPASANNSLAHS 218
++PV+P+ T S++PT+P+ + S ++S
Sbjct: 1612 QSPVSPSYSPTSPSYSPTSPSYSPTSPSYS 1641
>AY091591-1|AAM00045.1| 984|Caenorhabditis elegans calsyntenin
protein.
Length = 984
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 105 QMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELL----ADAGVVGANE 269
+ G ID + E +SEC + DDV+ EE E+L A+ VVG E
Sbjct: 910 EKNGGAIDEFSDEEEEEETDGESECSYRDEEDDVSEDEEDQTEVLPHLDANQRVVGGLE 968
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,231
Number of Sequences: 27780
Number of extensions: 221749
Number of successful extensions: 584
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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