Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30260
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09210.1 68418.m01043 hypothetical protein                          30   0.80 
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   5.7  
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    27   5.7  
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    27   5.7  
At2g04700.1 68415.m00480 ferredoxin thioredoxin reductase cataly...    27   5.7  
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica...    27   7.5  
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica...    27   7.5  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    27   9.9  

>At5g09210.1 68418.m01043 hypothetical protein
          Length = 603

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 23/78 (29%), Positives = 39/78 (50%)
 Frame = +3

Query: 51  SVFYHCGKFSSVHTEIIDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWAR 230
           S+F+   K   + T I DQM+  G   + + E  SS  ++S+CE     +      + A 
Sbjct: 233 SIFFLSQKNGYLITAIEDQMKVDGY--SLIVEGDSSTDDESDCETSAYEEARDSLLQRAD 290

Query: 231 ELLADAGVVGANEVRVES 284
           ++ +DA VV +   RV+S
Sbjct: 291 KIFSDASVVYSELSRVKS 308


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 304  APVTPALDSTRTSFAPTTPASANNSLAHS 218
            +P +P+   T  S++PT+PA +  S A+S
Sbjct: 1623 SPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1651


>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1613

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 78   SSVHTEIIDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGV 254
            SS+ TE  D  +   +DS A+ +TP  G +D + E+ P     AL+ E  +++  D  V
Sbjct: 938  SSMLTECRDVSKK--VDSVAVEQTPLEGVDDDKKEEKP---PTALSSELVKKVEEDVPV 991


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1613

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +3

Query: 78   SSVHTEIIDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGV 254
            SS+ TE  D  +   +DS A+ +TP  G +D + E+ P     AL+ E  +++  D  V
Sbjct: 938  SSMLTECRDVSKK--VDSVAVEQTPLEGVDDDKKEEKP---PTALSSELVKKVEEDVPV 991


>At2g04700.1 68415.m00480 ferredoxin thioredoxin reductase catalytic
           beta chain family protein contains Pfam profile: PF02943
           ferredoxin thioredoxin reductase catalytic beta
          Length = 146

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 462 VLCRKGFLSCRIGLQPRTVFR 400
           V C  GFLS  +G+ PRT FR
Sbjct: 6   VSCSFGFLSSPLGVTPRTSFR 26


>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1102

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 304 APVTPALDSTRTSFAPTTPASANNS 230
           AP + A  S RT+F P+TP +  N+
Sbjct: 862 APTSNAQPSMRTTFVPSTPPALKNA 886


>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
           protein contains similarity to ec31p [Oryza sativa]
           gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
           WD domain, G-beta repeat
          Length = 1104

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 304 APVTPALDSTRTSFAPTTPASANNS 230
           AP + A  S RT+F P+TP +  N+
Sbjct: 864 APTSNAQPSMRTTFVPSTPPALKNA 888


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1611

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 78   SSVHTEIIDQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARELLADAGV 254
            SS+ TE  D  +   +DS A+  TP  G +D + E+ P     AL+ E  +++  D  V
Sbjct: 938  SSMLTECRDVSKM--VDSVAVEHTPLEGVDDDKKEEKP---PTALSSELVKKVEEDVPV 991


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,897
Number of Sequences: 28952
Number of extensions: 207631
Number of successful extensions: 528
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)