Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30258
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   10.0 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   10.0 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   10.0 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   10.0 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   10.0 

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = +3

Query: 273 IVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXX--IQEIDT 446
           ++ +D  + +  +   F  YD+  NG +    L +                   I   DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 447 DGSGTVDFDEF 479
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 319 RSDCTTRKATVTFPRRACARSSGNWT 396
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 415 NSMASSKRSTLTEAAPSTSTS 477
           NS ASS R     A  STSTS
Sbjct: 821 NSPASSPRYLSAAATSSTSTS 841


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 272 ELSGQSYELGEFQTTRFVGVDLL 204
           +L+G ++ELG      +V +D+L
Sbjct: 98  QLTGGTWELGPMLCDSWVSLDIL 120


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 302 ERTQGSVQIVRQGRQRLHSHVEPARDPPGIGRA 400
           ER Q S +  R+ R+   +  E +RD  G GR+
Sbjct: 292 EREQKSYKNEREYREYRETSRERSRDRRGRGRS 324


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = +1

Query: 319 RSDCTTRKATVTFPRRACARSSGNWT 396
           +S C        F  ++C    G+WT
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWT 180


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 283 RTLRPCRKNSGKRSDCTTRKATV 351
           R LR    N    S+CTTRK  +
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRI 78


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 308 FFLHGLSVLFND 273
           FFLHG  +++ D
Sbjct: 99  FFLHGRGIVYRD 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,853
Number of Sequences: 438
Number of extensions: 2096
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)