Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30253
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.74 
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)                   28   4.0  
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)                  28   4.0  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.0  
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                28   4.0  
SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 387 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 515
           ED + R  +   +RI RLE    DL+ + +R     SD+N++V
Sbjct: 22  EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 390 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQV 515
           D +++  K    +  +LE +  DL+  +KRKD+ I+DLN  V
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVV 441


>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
          Length = 524

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 111 PPLLLCWFRVSYCKN*KMALRDGLANTS 28
           PP +LC F +S C   + A+ D  AN S
Sbjct: 116 PPTVLCHFHLSSCLTGQTAMNDSKANKS 143


>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 111 PPLLLCWFRVSYCKN*KMALRDGLANTS 28
           PP +LC F +S C   + A+ D  AN S
Sbjct: 108 PPTVLCHFHLSSCLTGQTAMNDSKANKS 135


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/24 (41%), Positives = 20/24 (83%)
 Frame = +3

Query: 378 DANEDTIKRVCKDYHERIARLEDE 449
           + +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167


>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 366 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 503
           + +  +NE  + RV  D  E  + L+ +K DLE I ++ +    +L
Sbjct: 51  EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96


>SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +3

Query: 390 DTIKRVCKDYHERIAR-LEDEKF---DLEYIVKRKDMEISDLNS 509
           D I+R  +     ++R LE+ K    +LE  V +KDME++DLN+
Sbjct: 6   DKIRRKLESELAEVSRQLEEAKQQIQELEAAVHKKDMELNDLNA 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,468,679
Number of Sequences: 59808
Number of extensions: 165092
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)