Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30252
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    44   6e-05
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    41   4e-04
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.26 
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   1.9  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    28   4.3  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   4.3  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    27   5.7  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   5.7  
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...    27   7.5  
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...    27   7.5  
At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1 [Ra...    27   9.9  
At4g18600.1 68417.m02755 expressed protein                             27   9.9  
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...    27   9.9  
At1g55580.1 68414.m06361 scarecrow transcription factor family p...    27   9.9  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 34/138 (24%), Positives = 70/138 (50%)
 Frame = +2

Query: 101 APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKF 280
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+ +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60

Query: 281 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 460
             K        K ++ ++++T +T+++ + +  K  +          K+GKL   + +  
Sbjct: 61  --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114

Query: 461 VAVNTNLDLDLAGPVVDV 514
             +N+++ L+   P++D+
Sbjct: 115 ATLNSSIGLN-PTPLLDL 131


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 25/86 (29%), Positives = 48/86 (55%)
 Frame = +2

Query: 104 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 283
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS  T+ ++ G     +++++ 
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61

Query: 284 VKDYGLTFTEKWNTDNTLATDITIQD 361
            K+    F  K +TD+++ T +T+ +
Sbjct: 62  YKN--ALFDVKIDTDSSVLTTVTLTE 85


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 104 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 238
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to desacetoxyvindoline
           4-hydroxylase [Catharanthus roseus][GI:1916643],
           flavonol synthase 1 [SP|Q96330]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 375 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 202
           PA +  ++V     V  +    +K  P  +   LEERL   F     E IP+++ S PD
Sbjct: 13  PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 304 SQAIVFHCKFGGKAAKNLSAFLVGGDSAGEFNTRLAL 194
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 92  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 253
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 107 PYYADLGKKANDVFSKGYHFGVFKLDLKT 193
           P  +  G K N ++  GY+FGV+ L  KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 432 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 271
           FP+   V  A +P   T  PA +  W+V+S +  VL +  + + +   +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 314 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 415
           +W  D+   TDI++ D I  G++     TF P T
Sbjct: 24  RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 314 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 415
           +W  D+   TDI++ D I  G++     TF P T
Sbjct: 24  RWTYDDVTVTDISLVDYI--GVQAAKHATFVPHT 55


>At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1
           [Rattus norvegicus] GI:3250916, ThiJ protein,
           Escherichia coli, PIR:H64771; contains Pfam profile
           PF01965 ThiJ/PfpI family
          Length = 472

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +2

Query: 227 ITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFA 406
           +    ESG+++G+ +S   V        EK  T     +D  +  ++  G +V ++G   
Sbjct: 374 LREQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVI 433

Query: 407 PQTGTKT 427
              G  T
Sbjct: 434 TSLGLAT 440


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 389  LEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVV 508
            + G+ AP + T+TG    +FT + VA + +L+  + G ++
Sbjct: 1309 IPGSEAPVSTTETGLHNETFTEEPVATDISLNEAVFGEII 1348


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 314 KWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQT 415
           +W+ D+   TDI++ D I  G++ +   TF P T
Sbjct: 24  RWSFDDVSVTDISLVDYI--GVQPSKHATFVPHT 55


>At1g55580.1 68414.m06361 scarecrow transcription factor family
           protein contains Pfam profile PF03514: GRAS family
           transcription factor
          Length = 445

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -3

Query: 241 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIGLLSKVSII 110
           + G +  G+  TR A  L ++F+   ++ + ED+ GLL ++ ++
Sbjct: 222 VTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLL 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,401
Number of Sequences: 28952
Number of extensions: 226082
Number of successful extensions: 663
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)