Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30247
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    26   0.17 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   1.6  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   8.6  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 329 KTSLMTASFCVWTILF-ISSILTLVSASILAATPXPGTH 216
           KT L T  +C + ILF +S  + LV  + L  TP P T+
Sbjct: 313 KTVLKTNKYCNFIILFYLSVFVILVYYASLDETPNPVTN 351


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 186 FHAPVCTFQLHLEPPP 139
           FHA   +  LH  PPP
Sbjct: 151 FHAAATSLPLHYPPPP 166


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 11  FLCVFDMASQTQGIQQLLAAEKR 79
           F+CV  + S+ +G+Q +   +KR
Sbjct: 345 FVCVNTLVSEQEGLQLINEMKKR 367


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 343 DIKPELHINYRLN*AKLLYLIHNLRLTN 426
           +++ E H N  L   + + + H L LTN
Sbjct: 234 ELEKEFHFNRYLTRRRRIEIAHALCLTN 261


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,544
Number of Sequences: 336
Number of extensions: 1760
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)