Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30247
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    29   0.55 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   1.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   1.7  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    26   2.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    25   6.7  
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    25   8.9  

>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 29  MASQTQ-GIQQLLAAEKRAAEKVSEARXAKSETPK 130
           M++QT  GIQQLL AEK A   V +AR  +++  K
Sbjct: 1   MSAQTNSGIQQLLEAEKVARNIVEKARQHRTQRLK 35


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 375  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 238
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 130 SRPRRRLKMKLKSTDRSVKGS-SKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQK 306
           +RP R         D S+  S SK+ K    V    +  + D+E + ++EE+ + ++  +
Sbjct: 71  NRPFRTNSSSFSPNDYSISESPSKSKKDGVHVSAVQLDNETDSEVESEVEELERELEAIE 130

Query: 307 EAVIKDV 327
           ++V  +V
Sbjct: 131 DSVYPEV 137


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 181 VKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNK 288
           V G+++  KPS  +PG     K + E + KI+E N+
Sbjct: 12  VFGTARIPKPSACLPGDFWKTKQEIEVQKKIDEFNQ 47


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 359 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 240
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 102 QGKRKAKRLKQAKEEAQDE 158
           +GK K K LK+ K E +DE
Sbjct: 215 KGKEKQKELKKGKREKKDE 233


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 32  ASQTQGIQQLLAAEKRAAEKVSEARXAKSETPKAGQGGGS 151
           A +T+GI+  L  EKR  EK+   +  K    +     GS
Sbjct: 39  AQKTRGIKAKLYQEKRRKEKIQMKKTIKQHEERNATQRGS 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,013
Number of Sequences: 5004
Number of extensions: 30066
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)