Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30247
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     33   0.18 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     31   0.73 
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    29   2.2  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    28   3.9  
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175...    27   8.9  

>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 26  DMASQTQGIQQLLAAEKRAAEKVSEARXAKS 118
           D   +  GIQQLLAAE+ A + V+ AR AKS
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKS 32


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +1

Query: 166  STDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVIKD 324
            S+ R+V+  + +L+  T+  G   AAK++ + +   +E +KMV  + E+ +K+
Sbjct: 3054 SSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKMVLVEVESPVKN 3106



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 166  STDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVI 318
            ST   V+    +L+  T   G    AK++ E +   EE+NKMV  + E+ +
Sbjct: 2083 STPTDVEDEEVDLQDETSYIGEFKDAKLEDEKETISEEINKMVAVEVESSV 2133


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 62  LAAEKRAAEKVSEARXAKSETPKAGQGGGSR*S*KVQTGA*KAVQRI 202
           LAA +R++   S A  A ++ P  G+GGG     K   GA  A +R+
Sbjct: 5   LAASRRSSSSSSVAAAAAAKRPAVGEGGGGG-GGKAAAGAAAAKKRV 50


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 174 VCTFQLHLEPPPWPALG 124
           V  FQ  + PPPWPA G
Sbjct: 231 VAAFQSRMMPPPWPARG 247


>02_05_0429 -
           28916583-28916882,28917286-28917408,28917484-28917561,
           28917889-28917950,28918260-28918347
          Length = 216

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 47  GIQQLLAAEKRAAEKVSEAR 106
           GIQQLLAAE+ A + V+ AR
Sbjct: 9   GIQQLLAAEQEAQQIVNAAR 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,089
Number of Sequences: 37544
Number of extensions: 195603
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)