Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30247
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 33 0.14
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 33 0.14
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07) 30 1.3
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 29 3.0
SB_43805| Best HMM Match : YscO (HMM E-Value=6) 29 3.0
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0) 29 3.0
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0) 28 4.0
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 28 5.3
SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9) 28 5.3
SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1) 28 5.3
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 27 6.9
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1) 27 6.9
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 27 9.2
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 27 9.2
SB_10007| Best HMM Match : PAN (HMM E-Value=0.25) 27 9.2
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 27 9.2
>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 25 RYGESDPRNPTASSC*KTRCGESQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVK 186
R G+ R + K +S++ K S+KRNA RPR K K ++ R VK
Sbjct: 112 RKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165
>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 25 RYGESDPRNPTASSC*KTRCGESQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVK 186
R G+ R + K +S++ K S+KRNA RPR K K ++ R VK
Sbjct: 112 RKGKRSVRKSSVKKLTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165
>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 30.7 bits (66), Expect = 0.74
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 238 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 378
AAK + +++IE +NK ++ KE + D + Y ++ E + N+ L
Sbjct: 7 AAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53
>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
Length = 732
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 148 LKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDV 327
LK+ L++ S K S + + W P A ID ETK ++++ ++A D+
Sbjct: 318 LKIVLRAL-ASPKASLEERLSNGWSPSRSRALSIDLETKEYVKQLEDATDINEQA---DI 373
Query: 328 LNLVYDIK 351
L+ +Y K
Sbjct: 374 LHFLYSTK 381
>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
Length = 315
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 238 AAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 378
AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L
Sbjct: 144 AAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193
>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
Length = 243
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 238 AAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 378
AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L
Sbjct: 144 AAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +1
Query: 88 ESQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKV 267
E + K +K+ + +++ K K K ++ K +KN K A++ +T
Sbjct: 12 EYREEKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKKEEEAEVGEKTLE 71
Query: 268 KIEEMNKMVQTQKE 309
E K+ +T+KE
Sbjct: 72 AENEEEKIEETEKE 85
>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 805
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 157 KLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAV 315
+LK ++ ++ ++K ++ K D ++K KI++ NK++QT ++ +
Sbjct: 253 RLKKLEKELQDTNKKMRLEKDKEVKEAKEKADTKSKQKIDDNNKLIQTLQKRI 305
>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 3.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 183 HAPVCTFQLHLEPPPW 136
HAP+CT ++ L PPW
Sbjct: 201 HAPLCTKRVRLSKPPW 216
>SB_9234| Best HMM Match : Topoisom_I_N (HMM E-Value=0)
Length = 335
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 133 RPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAA--KIDAETKVKIEEMNKMVQTQK 306
RP + + +D VK K+ PS P K+ A+ +K ++ K ++T+K
Sbjct: 7 RPYDTMHILYAGSDLKVKSEPKDKDPSQKKPQKPKTLNDKVTAQKAIKKDKDGKAIKTEK 66
Query: 307 EAVIK 321
+ V+K
Sbjct: 67 KPVVK 71
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 14 LCVFDMASQTQGIQQLLAAEKRAAEKVSEARXAKSETPKAGQGGGS 151
LC D ++ + A+E A + SEA A SE +AG+ GG+
Sbjct: 393 LCAVDTGVASKASEASEASEAGGASEASEAGGA-SEASEAGEAGGA 437
>SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)
Length = 262
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 112 RXPCLADFLRSAFFSS*KLLDSLGLTRHIE 23
R PC +D R +FF S K DSL T+ +E
Sbjct: 24 RYPCFSDINRKSFFYS-KTTDSLTTTKGLE 52
>SB_49433| Best HMM Match : DUF1327 (HMM E-Value=3.1)
Length = 728
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 6 HSFCVFSIWRVRPKESNSF-*LLKNALRRKSARQGKRK 116
H C+ +W + K S++F LK+ RR+SA+ RK
Sbjct: 634 HLRCLLKMWTLEKKTSSTFINALKHRRRRRSAKNKYRK 671
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 241 AKIDAETKVKIEEMNKMVQTQKEAVIKD 324
AK+D E K K +NKM ++E +I D
Sbjct: 2455 AKLDGEFKGKYYPLNKMTDEEQEQLIND 2482
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 314 TASFCVWTILFISSILTLVSASILAATPXPGTHVLGFKFFELPF 183
T + +LF+S ++ VS S+L P P V K F F
Sbjct: 98 TGDYSALRVLFVSYLVLFVSYSVLFVRPPPDFRVDADKGFNFSF 141
>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
Length = 1347
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 196 KNLKPSTWVPGXGVAAKIDAETKVKIE 276
++++ + W P G+ K+DA +VKI+
Sbjct: 700 RDIEENVWSPRFGLKGKVDATVEVKID 726
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +1
Query: 244 KIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKP 354
K DA T ++E+++K+++ + E +IK+ YD+KP
Sbjct: 1742 KHDATT-AELEKIDKLLRGKIEQLIKEHTKKKYDVKP 1777
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 139 RRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMN 285
R+ L K+ + + G++ +PS+ G GV +DA ++ KI +N
Sbjct: 364 RKTLMEKINHMESELGGTTPGTEPSSHATGRGVPCTLDAPSE-KIHGIN 411
>SB_10007| Best HMM Match : PAN (HMM E-Value=0.25)
Length = 134
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 9 SFCVFSIWRVRPKESNSF*LLKNALRRKSARQGKRKAKRL 128
+FCVF VR N F + +N + R+SA+ R K +
Sbjct: 6 AFCVFITVTVRLASGNQF-VARNTMERRSAKSAGRFRKHV 44
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 78 ALRRKSARQGKRKAKRLKQAKEEAQ 152
AL+RK ++QGK+ K+LK ++ Q
Sbjct: 213 ALKRKVSKQGKKFNKKLKGVSQQVQ 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,296,076
Number of Sequences: 59808
Number of extensions: 221854
Number of successful extensions: 647
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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