Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30247
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 53 1e-07
Z46787-8|CAA86746.1| 253|Caenorhabditis elegans Hypothetical pr... 28 4.6
U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical pr... 28 4.6
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.0
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chlor... 27 8.0
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chlor... 27 8.0
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo... 27 8.0
AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride ... 27 8.0
AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical ... 27 8.0
AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical ... 27 8.0
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 52.8 bits (121), Expect = 1e-07
Identities = 26/34 (76%), Positives = 29/34 (85%)
Frame = +2
Query: 29 MASQTQGIQQLLAAEKRAAEKVSEARXAKSETPK 130
MASQTQGIQQLLAAEKRAAEK++EAR K + K
Sbjct: 1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTK 34
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 235 VAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 378
+ +KI +T+ +I M + V K+AVI +L LV DIKPELH N L
Sbjct: 69 IESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 108 KRKAKRLKQAKEEAQDEV 161
KRK +R KQAK+EAQ EV
Sbjct: 27 KRKLQRTKQAKQEAQAEV 44
>Z46787-8|CAA86746.1| 253|Caenorhabditis elegans Hypothetical
protein C16C10.8 protein.
Length = 253
Score = 27.9 bits (59), Expect = 4.6
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +1
Query: 136 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEA 312
PR+ K + S + KNL W A K+ E K EE KM + QKEA
Sbjct: 106 PRKEAKF-INFLTNSCRLRDKNLALRAWQAIAAEADKMREEAIRKQEETQKMEKAQKEA 163
>U40945-1|AAA81719.2| 656|Caenorhabditis elegans Hypothetical
protein F10D7.1 protein.
Length = 656
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 88 ESQRGKXSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWV 222
E QR K N R +R +K + +STD+ GS K +P+T V
Sbjct: 327 EFQRYLIETKENRSVRSKR-VKSEFQSTDKKRAGSEKQKRPATKV 370
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 99 RQGKRKAKRLKQAKEEAQDE 158
R+ +++AKRLK+ KEE +D+
Sbjct: 1278 RRARKEAKRLKRQKEEQEDD 1297
>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform a protein.
Length = 1050
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 422 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 300
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type chloride
channel protein4, isoform b protein.
Length = 1085
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 422 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 300
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
chloride channel CLH-4b protein.
Length = 1084
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 422 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 300
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209
>AF173173-1|AAF13166.1| 978|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 978
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 422 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 300
++RK YN + + L+W GL+ + + L+ AS C
Sbjct: 97 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137
>AF078789-3|AAK68487.1| 295|Caenorhabditis elegans Hypothetical
protein Y44E3B.1b protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 69 LKNALRRKSARQGKRKAKRLKQAKEEAQDEV 161
LK A + R+ + KAK L+ K+E DE+
Sbjct: 233 LKRARNNDAVRKSRNKAKELQLQKDEEYDEM 263
>AF078789-2|AAK21516.1| 318|Caenorhabditis elegans Hypothetical
protein Y44E3B.1a protein.
Length = 318
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 69 LKNALRRKSARQGKRKAKRLKQAKEEAQDEV 161
LK A + R+ + KAK L+ K+E DE+
Sbjct: 233 LKRARNNDAVRKSRNKAKELQLQKDEEYDEM 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,000,874
Number of Sequences: 27780
Number of extensions: 165460
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -