Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30247
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG...    31   0.35 
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    28   3.2  
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    28   4.3  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   4.3  
At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibit...    27   5.7  
At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    27   5.7  
At1g44810.1 68414.m05133 expressed protein  contains Pfam profil...    27   7.5  
At5g28320.1 68418.m03438 expressed protein This is likely a pseu...    27   9.9  

>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
           / V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
           subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
           synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
           proton pump G subunit 2) [Arabidopsis thaliana]
          Length = 106

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 38  QTQGIQQLLAAEKRAAEKVSEARXAK 115
           ++ GIQQLLAAE+ A + V+ AR AK
Sbjct: 2   ESAGIQQLLAAEREAQQIVNAARTAK 27


>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 15  CVFSIWRVRPKESNSF*LLKNALRRKSARQG--KRKAKRLKQAKEEAQDE 158
           CV S   V PK+     +LK    RKSA+QG  K+ +  +++ ++ + DE
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNSTGIRRTQQNSIDE 389


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 133 CFRRFAFRXPCLADFLRSAF-FSS*KLLDSLGLTRHIEN 20
           C    AFR  C A+FLR+   F+S   L+SL LT  + N
Sbjct: 528 CDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLN 566


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 238 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 363
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 186

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 491 LVTMICQINIQFIFLNKSDQIKLVRRKLCIK 399
           L+  IC+  I F F N++   +LVRR+  IK
Sbjct: 31  LINRICKQTIDFKFCNQTITSQLVRRQTSIK 61


>At1g76740.1 68414.m08931 expressed protein weak similarity to
           fimbriae-associated protein Fap1 (GI:3929312)
           [Streptococcus parasanguinis]; weak similarity to 1MDa_1
           protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 139 RRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVI 318
           RR +++K ++ ++S+ G S + +P         A +   E K+K  + + +V +QKE V 
Sbjct: 236 RRSIRLKARAANQSMGGESSDGRPLC------SAKETKEEIKIKQSKRSTVVSSQKELVE 289

Query: 319 KDVLNLVYDIK 351
           +     + D K
Sbjct: 290 RKAKEPLVDSK 300


>At1g44810.1 68414.m05133 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 296

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 241 AKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDI 348
           +K+  ETK +IEE  KMV+ ++  ++   ++++ ++
Sbjct: 253 SKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEV 288


>At5g28320.1 68418.m03438 expressed protein This is likely a
           pseudogene.
          Length = 967

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
 Frame = +1

Query: 88  ESQRG-KXSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKP--STWVPGXGVAAKIDAE 258
           + +RG     K +  S+P++    KL  T  +VKGSS N +    +     G    I+ E
Sbjct: 500 DEERGVARKHKLDVDSQPQKNDYQKLSETGTAVKGSSSNKREELKSAKSSSGGTEHIEKE 559

Query: 259 TK------VKIEEMNKMVQTQKEAVIKDVLNL 336
                   ++   MN  ++TQ+   I D+  L
Sbjct: 560 EPSGKENWIEKTTMNLSLETQEPGTIADIAEL 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,377,746
Number of Sequences: 28952
Number of extensions: 156564
Number of successful extensions: 469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)