Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30246
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    27   0.099
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.53 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.53 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.70 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   0.92 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   8.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 0.099
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +1

Query: 331 LRGSGTPLAP----RSPIPNASATPFRTPSPLPPSWRGPES 441
           L G+ TPL      +  +P      F T   LPP W+G ES
Sbjct: 189 LNGAHTPLTDDHDEKYGVPTLEELGFDTEGRLPPVWQGGES 229


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19   SAFAQVHPNAMGRLHTFVVTLRRDSREINW 108
            S FA    NA+  L  F++TL++D   I W
Sbjct: 1268 SVFAFFMMNALFVLIVFLLTLKKDYLHIKW 1297


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.53
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19   SAFAQVHPNAMGRLHTFVVTLRRDSREINW 108
            S FA    NA+  L  F++TL++D   I W
Sbjct: 1268 SVFAFFMMNALFVLIVFLLTLKKDYLHIKW 1297


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 382 SATPFRTPSPLPPSWRGPESLPRSTPVPPS 471
           S TP    SP PP        P   P P S
Sbjct: 36  SMTPNSAASPAPPEEEAASPTPGDVPTPSS 65



 Score = 22.6 bits (46), Expect = 2.1
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +1

Query: 337 GSGTPLAPRSPIP----NASATPFRTPSPLPP 420
           GS TP +  SP P     AS TP   P+P  P
Sbjct: 35  GSMTPNSAASPAPPEEEAASPTPGDVPTPSSP 66


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 368 PYPTQAPHHSGLQARCLRHGVVRNLCLAAHRCHLRNS----SHNWTANTEPIC 514
           PY +   HH  LQAR  +         AA  C L +S    + N+++N++P C
Sbjct: 47  PYASSQHHHHHLQARPPQDSPYDASVAAA--CKLYSSEGQQNSNYSSNSKPDC 97


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 163 VTPGTPAGRDLVRGDIIAKIDDYDARD 243
           V+  TP    LVRG ++AK    DARD
Sbjct: 502 VSVATPNDTSLVRGRLVAK-PVADARD 527


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 131 APPTSRSPQLISRESLRRVTTNVCNRPIAF 42
           +P +S SP++      R  T  VCNR   +
Sbjct: 117 SPTSSVSPEVKDSSRDRPFTCEVCNRSFGY 146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 19   SAFAQVHPNAMGRLHTFVVTLRRDSREINWGL 114
            S FA    NA+  L  F++ L +D   + W L
Sbjct: 1268 SVFAFFMFNALFVLVVFLLQLNKDQIHVKWPL 1299


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 19   SAFAQVHPNAMGRLHTFVVTLRRDSREINWGL 114
            S FA    NA+  L  F++ L +D   + W L
Sbjct: 1268 SVFAFFMFNALFVLVVFLLQLNKDQIHVKWPL 1299


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 427 RGPESLPRSTPVPPSQFQPQL 489
           +GP  L +S P   ++ QP L
Sbjct: 169 KGPVDLSKSEPEKKTESQPML 189


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 247 RHEDAQNLFKNAPNQIKLVI 306
           R +  +NLFKNA  Q+ L I
Sbjct: 122 RDQKERNLFKNAYFQLVLSI 141


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 328 GLRGSGTPLAPRSPIPNASATPFRTPSPLPP 420
           G+     P AP+S     S++   +P+  PP
Sbjct: 5   GIYEESPPPAPQSAATPISSSGMTSPAAAPP 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,963
Number of Sequences: 336
Number of extensions: 3276
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)