Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30245
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.24
SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.31
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 29 0.41
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 1.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 2.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 3.8
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 5.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 6.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 8.9
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 8.9
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 30.7 bits (66), Expect = 0.14
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Frame = -2
Query: 488 IASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVAEICDXXXXXX 309
+A+ +I+ G + TS +T S T + S T + S S ++ + + + I
Sbjct: 124 LAASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSV 183
Query: 308 XXXXXXXXXXS--IDLVTVSGIASVTVSGIASAFSDSTCSRVGCREETS 168
D TVS ++ T+SG +++ + ++ S G +S
Sbjct: 184 SSSSASSSGSISSADAKTVSASSNSTISGFSTSTTSASSSAAGNSSSSS 232
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 515 VTVGTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 357
+T + ++ +S SI T +TST T + ++ + S TAT S S + +S
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677
>SPAC27E2.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 81
Score = 29.5 bits (63), Expect = 0.31
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 515 VTVGTAAEAIASDSIATGQTAKT-STGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 339
VT+ A +A S + T T +T T + T + + T + + SIT +SGAFV+A
Sbjct: 12 VTMALAVQAANSTAPYGNTTNSTGTTNGTNGTNTTTSSTATQSSAASIT-NFSSGAFVIA 70
Query: 338 EI 333
I
Sbjct: 71 MI 72
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 29.1 bits (62), Expect = 0.41
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 67 DYMGADSFDNIWAKISQTLSQPRTSPPKQLSPPKEVSS--RQPTLEQVESENAEAIPETV 240
DY G + N W I +T + P SP + VSS + TL +SEN I + +
Sbjct: 1129 DYRGINEILNCWESIIKTTHENAIISPVGSSPVEAVSSTLKNLTLRFSQSENVFPIEQII 1188
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 112 SQTLSQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEAIPETVTKSI 276
S +QP PP+Q PP SS P Q + + P +A P+ + I
Sbjct: 200 SAVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAYPQAPQQPI 254
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/58 (20%), Positives = 21/58 (36%)
Frame = -1
Query: 360 FRSICSRGNL*WSFFNRCFGRYSYCCIFN*LGNSFWNCLGNSFWNCLSILRFHLFKSW 187
+RS+ R + W F ++ Y + FWN W+ + +L W
Sbjct: 2135 YRSLGKRNIVIWFFISQILINYWLAVPYGQAWRFFWNTSNTPLWSIIILLLIFFIVVW 2192
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 3.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 267 GNSFWNCLGNSFWNCLSIL 211
G + WN L S++NC+++L
Sbjct: 532 GVNAWNSLETSYYNCMTVL 550
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 417 DRSRLRYCDRITIYYSRQNFRSICSRGNL 331
D+S LRY D I ++ +Q +R++ S L
Sbjct: 36 DKSALRYIDAILDHHLKQIYRNLTSNSPL 64
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.1
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Frame = -2
Query: 512 TVGTAAEAIAS-DSIATGQTAKTSTGATRDSEVTGAG-SGTATESLS-ITAGRTSGAFVV 342
+V TA+ +S S+AT +ST + + VTG+ S AT S + + + A +
Sbjct: 1016 SVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSSTSSVATASIT 1075
Query: 341 AEICDXXXXXXXXXXXXXXXXSIDLV-TVSGIASVTVSGIASAFSDSTCSRVGCREETS 168
+ ++ +V G AS T++ ASA + S+ + G TS
Sbjct: 1076 GSLSSSIATASVTGSPTSSVTAVSSTSSVEGTASSTIAAAASAATLSSDAASGSSTVTS 1134
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 512 TVGTAAEAIAS-DSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 357
++ TA+ + +S S+AT +ST + + VTG+ S ++ + S+T TS
Sbjct: 977 SIATASVSGSSTSSVATASATDSSTSSIAAASVTGS-STSSVATASVTDSSTS 1028
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 482 SDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 357
S+ + T ++ AT + TGAG+G + S +T +T+
Sbjct: 174 SNQSTSNSTRNGTSAATSNGTGTGAGTGASHRSSPVTNRQTN 215
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = -2
Query: 245 SVTVSGIASAFSDSTCSRVGCR---EETSLGGDNCLGGEVRGWLKV*EIFAQILSKESAP 75
SV V + +AF + CS GC+ + D C GG + +L + +++++ +S
Sbjct: 455 SVVVDTLVAAFDIAKCSNFGCQVMNHVPMIVIDQCDGGSI--YLSKSSLSSEVVTSKSTS 512
Query: 74 I 72
+
Sbjct: 513 L 513
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 270 VN*RCNSNCTYRNNG*RNSITNFRDYK 350
VN CN+NC + +G R + RD K
Sbjct: 185 VNHDCNANCRFNTSGKRIWLRCVRDIK 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.305 0.121 0.331
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,237
Number of Sequences: 5004
Number of extensions: 31638
Number of successful extensions: 72
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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