Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30245
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57120.1 68416.m06359 protein kinase family protein contains ... 30 1.1
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 1.1
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 1.4
At5g24630.1 68418.m02909 expressed protein ; expression support... 29 2.5
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 3.2
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 4.3
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 28 4.3
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 28 4.3
At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family p... 28 4.3
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 5.7
At3g28840.1 68416.m03598 expressed protein 27 5.7
At3g22231.1 68416.m02805 expressed protein 27 5.7
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 27 5.7
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 27 5.7
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 27 5.7
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 7.5
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 7.5
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 27 7.5
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 27 7.5
At4g29440.1 68417.m04203 expressed protein contains Pfam profil... 27 7.5
At3g49540.1 68416.m05414 expressed protein 27 9.9
At1g24370.1 68414.m03073 hypothetical protein contains Pfam prof... 27 9.9
>At3g57120.1 68416.m06359 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 456
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 476 SIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTS 357
S +T T T+T T +S TGA S ++ + S A RTS
Sbjct: 50 SPSTSNTGTTTTTTTSNSNKTGASSSSSGAASSSVASRTS 89
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 506 GTAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFV 345
G+ AS A+G + + + GA T AGSGT+TE+ S+ G + V
Sbjct: 450 GSTGSESASAGAASGGSTEANGGAAAGGS-TEAGSGTSTETSSMGGGSAAAGGV 502
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 124 SQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEAIPETVT 267
S P SPP SPP V+S P + S + P T A P+TV+
Sbjct: 68 SSPPPSPPVITSPPPTVASSPPPPVVIASP-PPSTPATTPPAPPQTVS 114
>At5g24630.1 68418.m02909 expressed protein ; expression supported
by MPSS
Length = 531
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 130 PRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETVT-EAIPETVTKS 273
P+T PKE +S Q L+ + + I E VT E P+T +KS
Sbjct: 228 PKTKSKSSRKTPKEGNSAQEILKTEDKDTDTTIAEQVTPEKSPKTKSKS 276
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats, Pfam:PF00560;
contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 3.2
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Frame = +1
Query: 124 SQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEA--IPETVTKSIEDAXXXX 297
S P + P + +P S + P L V++ P T +E +P ++S +
Sbjct: 693 STPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETSQVPTPSSESNQSPSQAP 752
Query: 298 XXXXXXXXXXSQISATTNAP----EVLPAVIDSDSVAVPEPAPVTSESL 432
+ S +P E + + S+ V PEP PV S+
Sbjct: 753 TPILEPVHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSV 801
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 142 PPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEAIPET 261
PPK + PP+ SS +P+ + N ++ P ++P T
Sbjct: 269 PPKHMPPPQNYSSHEPSPNSL--PNFQSYPSFSESSLPST 306
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 109 ISQTLSQPRTSP--PKQLSPP-KEVSSRQPTLEQVESENAEAIPETVTEAIPETVTKSIE 279
I + SQP SP P +S P +R P + A ETVT IPE V +I
Sbjct: 97 IPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATIS 156
Query: 280 DA 285
+
Sbjct: 157 SS 158
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +1
Query: 109 ISQTLSQPRTSP--PKQLSPP-KEVSSRQPTLEQVESENAEAIPETVTEAIPETVTKSIE 279
I + SQP SP P +S P +R P + A ETVT IPE V +I
Sbjct: 97 IPPSTSQPSISPQTPASVSAPVAPAPTRPPPPAPTPTPAPVAATETVTTPIPEPVPATIS 156
Query: 280 DA 285
+
Sbjct: 157 SS 158
>At1g19950.1 68414.m02500 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 315
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 115 QTLSQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPET-VTEAIPETVTK 270
Q+ +P+ KQ + P+E +QP L + S+ A + P+ + P+ VTK
Sbjct: 145 QSTPKPKPKEKKQAAAPEEEEQKQPDL-KATSQAASSNPQVRLQSKKPQLVTK 196
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 163 PKEVSSRQPTLEQVESENAEAIPETVTEAIPETVTKSIEDA 285
P+E+ + E+VE E E I E + E + + EDA
Sbjct: 29 PEEILEEEVEYEEVEEEEIEEIEEEIEEEVEVEEEEEEEDA 69
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 503 TAAEAIASDSIATGQTAKTSTGATRDSEVTGAGSGTATESLSITAGRTSGAFVVA 339
TAA + T T+ GAT T AG TA+++ + SGA A
Sbjct: 243 TAAGGTTASGAGTAGYGATAGGATASGAGTAAGGTTASDAGTAAGTTASGAGTAA 297
>At3g22231.1 68416.m02805 expressed protein
Length = 81
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 106 KISQTLSQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETV 240
K S+T S P TSPP P ++ P VE+ + PE +
Sbjct: 13 KPSETSSGPYTSPPPIGYPTRDAVVGDPPAAAVETNSKGVNPEAI 57
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -2
Query: 506 GTAAEAIASDSIATGQTAK-TSTGATRDSEVTGAGSGTATESLSITAGRTSGA 351
GT TG T T TG T TG G+GT T G +G+
Sbjct: 198 GTGTGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGTGS 250
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -2
Query: 506 GTAAEAIASDSIATGQTAK-TSTGATRDSEVTGAGSGTATESLSITAGRTSGA 351
GT TG T T TG T TG G+GT T G +G+
Sbjct: 198 GTGTGTGTGTGTGTGGTGTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGTGS 250
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
[Arabidopsis thaliana]
Length = 2603
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 148 KQLSPPKEVSSRQPTLEQVESEN-AEAIPET 237
K PPK SRQ T ++ EN E+ PET
Sbjct: 1714 KAFEPPKPSPSRQYTQRKIHEENQKESCPET 1744
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 RXTSTEAIDDLARRQGWEAGNIDYMGADSFDNIWAKISQTLSQP-RTSPPKQLSPPKEVS 177
R S A D RR N + S A+ S S P +TSP +++SP K +
Sbjct: 183 RTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSN 242
Query: 178 SRQPTLEQVESENAEAI 228
R P+ + S + A+
Sbjct: 243 ERSPSPRRSLSPRSPAL 259
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.1 bits (57), Expect = 7.5
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 RXTSTEAIDDLARRQGWEAGNIDYMGADSFDNIWAKISQTLSQP-RTSPPKQLSPPKEVS 177
R S A D RR N + S A+ S S P +TSP +++SP K +
Sbjct: 183 RTRSRSASPDEKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSN 242
Query: 178 SRQPTLEQVESENAEAI 228
R P+ + S + A+
Sbjct: 243 ERSPSPRRSLSPRSPAL 259
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 363 NFRSICSRGNL*WS--FFNRCFGRYSYCCIFN*LGNSFW 253
N R +CS+ NL + + GRY CC + L N W
Sbjct: 647 NTRPLCSQCNLLCAQTLVFKQIGRYESCCTLDCLANYIW 685
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.1 bits (57), Expect = 7.5
Identities = 23/92 (25%), Positives = 27/92 (29%)
Frame = +1
Query: 142 PPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEAIPETVTKSIEDAXXXXXXXXXXXX 321
PP SPP V S P + P + P V
Sbjct: 569 PPPVFSPPPPVYSPPPPVHSPPPPVHSPPPPAPVHSPPPPVHSPPPPPPVYSPPPPVFSP 628
Query: 322 XXSQISATTNAPEVLPAVIDSDSVAVPEPAPV 417
SQ +P P I+S V P PAPV
Sbjct: 629 PPSQSPPVVYSPPPRPPKINSPPVQSPPPAPV 660
>At4g29440.1 68417.m04203 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 1090
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 112 SQTLSQPRTSPPKQLSPPKEVSSRQPTLEQVESENAEAIPETVTEAIPETVTK 270
++ +S R SP K L+P + ++Q L + ++ ++P+TVT PET K
Sbjct: 1018 TEKISHYRESPSK-LTPEAKSMAKQEGL----ASSSSSLPKTVTSPDPETPAK 1065
>At3g49540.1 68416.m05414 expressed protein
Length = 166
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 193 LEQVESENAEAIPETVTEAIPETVTKSIE 279
+E +ENAEA E V A PE V ++E
Sbjct: 99 VENAATENAEAKVEAVAVAAPEKVEVAVE 127
>At1g24370.1 68414.m03073 hypothetical protein contains Pfam
profiles PF04776: Protein of unknown function (DUF626),
PF04827: Protein of unknown function (DUF635)
Length = 413
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 61 NIDYMGADSFDNIWAKISQTLSQPRTSPPKQLSPPKEVSSRQ 186
N+ Y AD W+ + QT+ PR P K+L K+ + R+
Sbjct: 158 NMSYYLADGIYPKWSTLVQTIHDPR-GPKKKLFAMKQEACRK 198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.305 0.121 0.331
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,308,565
Number of Sequences: 28952
Number of extensions: 172462
Number of successful extensions: 500
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
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