Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30240
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ... 36 0.004
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 29 0.41
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.2
SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom... 27 2.2
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.2
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 27 2.2
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 5.1
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 5.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 6.7
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 6.7
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 6.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 6.7
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 25 8.9
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.9
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 8.9
>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 35.9 bits (79), Expect = 0.004
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Frame = +1
Query: 127 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLF-SMFRENVAVYFYVFIGVL 303
M+I + + L EI +++ LP+ P + + + + S F V + I +
Sbjct: 1 MTIYYMIVFMLLMVEIVSFVILSLPL--PLKVRRAILNAISNSPFAGRVKHVLKITIICI 58
Query: 304 ALFLIDAVREIRKYSNVTDVSHTHLATEMKTH----VKLFRAQRNFYIIGFAIFLTFVIR 471
+ D+VR + + + D++ +T F AQRN Y+ G A+FL+ V+
Sbjct: 59 LILFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVN 118
Query: 472 R----LITMLIIQDELK 510
R L M+ QD+++
Sbjct: 119 RYYLALEAMIAAQDKMQ 135
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 160 LYFEIALVMLMILPIFSPRRWNQFFK 237
L + I L +L+I+P+F PR W+ K
Sbjct: 159 LAYNITLFLLVIIPLFFPRAWSPTVK 184
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 130 SIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSR 243
SIQ FI G + + L +L+I+P+F +N+ + R
Sbjct: 1029 SIQVLFILGVICYSAPLSLLLIVPLFFLYLYNRAYYVR 1066
>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 163
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 160 LYFEIALVMLMILPIFSPRRWNQFFKSRLFS 252
+YF A+V + P+ WN ++K++L S
Sbjct: 64 VYFGYAMVQKRVFPMVMSVGWNPYYKNKLRS 94
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/41 (24%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 217 RWNQFFKSRLFSMFRENVAVYFYVFIGVLALFL-IDAVREI 336
RW++FF+ ++ + + + V +G +A+F+ +D +R +
Sbjct: 436 RWHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRL 476
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 268 VAVYFYVFIGVLALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFY 432
VA+ + +GV ++ L + ++ + T + T LAT+++T +LFR + N Y
Sbjct: 20 VAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLY 74
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 313 LIDAVREIRKYSNVTDVSHTHLATEMKT 396
L+DAV I+ +SN+ V T++ +E T
Sbjct: 73 LVDAVPAIKNFSNIRGVQVTNVGSEELT 100
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 313 LIDAVREIRKYSNVTDVSHTHLATEMKT 396
L+DAV I+ +SN+ V T++ +E T
Sbjct: 73 LVDAVPAIKNFSNIRGVQVTNVGSEELT 100
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 157 YLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYF 282
+ YF I +V I P+F+PR W F + E V F
Sbjct: 194 WFYFFITIVGNFI-PLFTPRVWYPLFPEDNYQPSAEQVCSMF 234
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 136 QWTFIAGYLYFEIALVMLMILPIFSPRRWNQFF 234
Q F+ + + + M++I+P+F R+NQ +
Sbjct: 1029 QIVFVLAVICYSSPMFMILIVPLFFLYRYNQVY 1061
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 338 RISLTASIKNNANTPMN--T*KYTATFSRNIENRRDLKN*F 222
++SLT SIKN + + + KY ++ENRR L+N F
Sbjct: 221 KVSLT-SIKNTSLSHFSKFNFKYALPIHMSLENRRSLENLF 260
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 321 INQKQRQHTDEHIEIYSYVFS 259
+N K H ++HI+ SY+FS
Sbjct: 197 LNPKDASHYEQHIDDSSYLFS 217
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 147 HCWVSIFRNCFSDADDITYIQS*K 218
+CW + SDA+D+ YIQ+ K
Sbjct: 175 NCWPYYTSSPTSDAEDLVYIQNSK 198
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 24.6 bits (51), Expect = 8.9
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +3
Query: 189 DDITYIQS*KMESIFQITSVFNVSRKRSCIFLCVHRCVGVVFD*CSERDTEIFKCYGREP 368
+DI IQ+ + S+F + + ++S F C+ + V+ T
Sbjct: 596 NDIVLIQADQPTSVFDLCWTIKPTYEKSSNFSCLQLPIPVLNTPILTPVT--INIQSTTY 653
Query: 369 HSFSYRNENSRQAISSPKKLL 431
+ Y N+NS++ + P LL
Sbjct: 654 YLIGYANQNSKKTLDQPTSLL 674
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 304 ALFLIDAVREIRKYSNVTDVSHTHLATE--MKTHVK 405
A+ + + + ++ +SN+ V +HL TE MKT +K
Sbjct: 124 AMLVGNGIEKLLLHSNIKLVPESHLITERSMKTQIK 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,384
Number of Sequences: 5004
Number of extensions: 41173
Number of successful extensions: 117
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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