Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30240
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_12432| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               27   9.2  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 258  SRKRSCIFLCVHRCVGVVFD*CSERDTEIFKCY 356
            SR  +C+F CV+  V V    CS   T +F C+
Sbjct: 937  SRVFTCLFACVYLSVRVCSPVCSRAFTSLFACF 969



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 252  NVSRKRSCIFLCVHRCVGVVFD*CSERDTEIFKC 353
            +VSR  +C+  CVH  V V    CS   T +F C
Sbjct: 1312 SVSRVLTCLSACVHLSVRVCSHVCSRVFTVLFAC 1345



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 258  SRKRSCIFLCVHRCVGVVFD*CSERDTEIFKC 353
            +R  +C+F CVH  V V    CS   T +F C
Sbjct: 1003 TRVLTCLFACVHLSVRVRSPVCSRVFTCLFAC 1034


>SB_12432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 83 SVKLTTIAPQYDYYNNY 33
          S+K T I+P YDY++NY
Sbjct: 35 SIKYTGISPDYDYWDNY 51


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 231 KLIPSSRTEYR*YHQHH*SNFEI*I-PSNEGPLYGHI*LLVFGDFLN 94
           KL+PSS + Y  YH  H +   I I PS+    Y H    + G  +N
Sbjct: 390 KLLPSSPSTYHHYHHQHITIITINILPSSPSTYYHHHRYYITGIAIN 436


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 187 LMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGV 300
           L+ LP       N +   R FSM R  V VY YV++ V
Sbjct: 240 LLFLPTDRGCHRNAYASRRPFSMLRVYVYVYVYVYVYV 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,360
Number of Sequences: 59808
Number of extensions: 276188
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)