Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30240
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.     107   6e-24
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...   107   6e-24
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    29   2.0  
Z81545-6|CAB04441.1|  287|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z68116-8|CAH60761.1|  101|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68116-6|CAD54145.1|  101|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68116-5|CAD54144.1|  101|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score =  107 bits (256), Expect = 6e-24
 Identities = 50/121 (41%), Positives = 74/121 (61%)
 Frame = +1

Query: 127 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 306
           M++QWT +AG LY EIA+   ++LP   P  W++ FKSRLF+   ++  +Y   F  VL 
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 307 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 486
           +   D VRE  KY+ +         ++   H++LFRAQRN YI GFA+ L  VI+R++T+
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 487 L 489
           L
Sbjct: 121 L 121


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score =  107 bits (256), Expect = 6e-24
 Identities = 50/121 (41%), Positives = 74/121 (61%)
 Frame = +1

Query: 127 MSIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAVYFYVFIGVLA 306
           M++QWT +AG LY EIA+   ++LP   P  W++ FKSRLF+   ++  +Y   F  VL 
Sbjct: 1   MTLQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLF 60

Query: 307 LFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLITM 486
           +   D VRE  KY+ +         ++   H++LFRAQRN YI GFA+ L  VI+R++T+
Sbjct: 61  ILFADGVRETMKYNGLEGQMGRTAESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTL 120

Query: 487 L 489
           L
Sbjct: 121 L 121


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta
           family protein 6 protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 157 YLYFEIALVMLMILPIFSPRRWNQFFKSRLFS-MFRENVAVYFYVFIGVLALFLIDAVRE 333
           +L  ++A +  ++     P RW+ FF    FS    +    +FY+ + +LA+      R+
Sbjct: 100 FLTNKMAHIFSLVFAADFPERWSSFFNDLFFSDNINDRKVAFFYLKV-LLAIDTEVVNRD 158

Query: 334 IRKYSNVTD 360
           I++  N +D
Sbjct: 159 IQRSKNESD 167


>Z81545-6|CAB04441.1|  287|Caenorhabditis elegans Hypothetical
           protein F49H6.7 protein.
          Length = 287

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 301 LALFLIDAVREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLI 480
           + L  I  + E+RK  N+T     + +T++ T + +F    N    G A  ++F     I
Sbjct: 174 IPLTTILLISELRKSRNMTSKHQENRSTKLVTWMTIFFTLAN-APYGLAYSISFWFSNYI 232

Query: 481 TMLIIQ 498
           TML+ Q
Sbjct: 233 TMLMAQ 238


>Z73908-5|CAA98129.2|  325|Caenorhabditis elegans Hypothetical
           protein F53B2.4 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
 Frame = +1

Query: 130 SIQWTFIAGYLYFEIALVMLMILPIFSPRRWNQFFKSRLFSMFRENVAV-YFYVFIGVLA 306
           SI +T+++    F   L  L ++P++ PRR NQ   +RL      N A+ + Y++  +  
Sbjct: 117 SIYFTYVSWL--FPFLLSTLRLIPVYFPRRHNQLC-ARL-----SNFAIPFIYLYPFIFT 168

Query: 307 LFLIDAVREIRKYSNVTDVSHTHL-ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRRLIT 483
             LI A+   R+           +  T     +KL     N  ++  AI+L   I   +T
Sbjct: 169 FSLIPALGSCRQLLGPYKFGSIFIWFTGNWFDIKLI----NGLVLNLAIWLLLCIISNLT 224

Query: 484 MLIIQDELK 510
           +LI   +LK
Sbjct: 225 LLIKLKKLK 233


>Z68116-8|CAH60761.1|  101|Caenorhabditis elegans Hypothetical
           protein F42F12.10 protein.
          Length = 101

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 249 FNVSRKRSCIFLCVHRCVGVVFD*CSERDTEIFKC 353
           F   R ++C  LCVH C   V+D     D + F+C
Sbjct: 45  FATHRNKTCYNLCVHNC-AAVYDGSCTTDKD-FRC 77


>Z68116-6|CAD54145.1|  101|Caenorhabditis elegans Hypothetical
           protein F42F12.9 protein.
          Length = 101

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 249 FNVSRKRSCIFLCVHRCVGVVFD*CSERDTEIFKC 353
           F   R ++C  LCVH C   V+D     D + F+C
Sbjct: 45  FATHRNKTCYNLCVHNC-AAVYDGSCTTDPD-FRC 77


>Z68116-5|CAD54144.1|  101|Caenorhabditis elegans Hypothetical
           protein F42F12.8 protein.
          Length = 101

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 249 FNVSRKRSCIFLCVHRCVGVVFD*CSERDTEIFKC 353
           F   R ++C  LCVH C   V+D     D + F+C
Sbjct: 45  FATHRNKTCYNLCVHNC-AAVYDGSCTTDKD-FRC 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,075,665
Number of Sequences: 27780
Number of extensions: 223747
Number of successful extensions: 590
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)